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IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods.
Vallat B, Webb BM, Westbrook JD, Goddard TD, Hanke CA, Graziadei A, Peisach E, Zalevsky A, Sagendorf J, Tangmunarunkit H, Voinea S, Sekharan M, Yu J, Bonvin AAMJJ, DiMaio F, Hummer G, Meiler J, Tajkhorshid E, Ferrin TE, Lawson CL, Leitner A, Rappsilber J, Seidel CAM, Jeffries CM, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, Velankar S, Schwede T, Trewhella J, Kesselman C, Berman HM, Sali A. Vallat B, et al. Among authors: kesselman c. J Mol Biol. 2024 Mar 18:168546. doi: 10.1016/j.jmb.2024.168546. Online ahead of print. J Mol Biol. 2024. PMID: 38508301 Free article.
Correction: Reproducible big data science: A case study in continuous FAIRness.
Madduri R, Chard K, D'Arcy M, Jung SC, Rodriguez A, Sulakhe D, Deutsch E, Funk C, Heavner B, Richards M, Shannon P, Glusman G, Price N, Kesselman C, Foster I. Madduri R, et al. Among authors: kesselman c. PLoS One. 2023 Nov 21;18(11):e0294883. doi: 10.1371/journal.pone.0294883. eCollection 2023. PLoS One. 2023. PMID: 37988378 Free PMC article.
Making Common Fund data more findable: catalyzing a data ecosystem.
Charbonneau AL, Brady A, Czajkowski K, Aluvathingal J, Canchi S, Carter R, Chard K, Clarke DJB, Crabtree J, Creasy HH, D'Arcy M, Felix V, Giglio M, Gingrich A, Harris RM, Hodges TK, Ifeonu O, Jeon M, Kropiwnicki E, Lim MCW, Liming RL, Lumian J, Mahurkar AA, Mandal M, Munro JB, Nadendla S, Richter R, Romano C, Rocca-Serra P, Schor M, Schuler RE, Tangmunarunkit H, Waldrop A, Williams C, Word K, Sansone SA, Ma'ayan A, Wagner R, Foster I, Kesselman C, Brown CT, White O. Charbonneau AL, et al. Among authors: kesselman c. Gigascience. 2022 Nov 21;11:giac105. doi: 10.1093/gigascience/giac105. Gigascience. 2022. PMID: 36409836 Free PMC article.
FaceBase: A Community-Driven Hub for Data-Intensive Research.
Schuler RE, Bugacov A, Hacia JG, Ho TV, Iwata J, Pearlman L, Samuels BD, Williams C, Zhao Z, Kesselman C, Chai Y. Schuler RE, et al. Among authors: kesselman c. J Dent Res. 2022 Oct;101(11):1289-1298. doi: 10.1177/00220345221107905. Epub 2022 Jul 31. J Dent Res. 2022. PMID: 35912790 Free PMC article. Review.
Kidney repair and regeneration: perspectives of the NIDDK (Re)Building a Kidney consortium.
Naved BA, Bonventre JV, Hubbell JA, Hukriede NA, Humphreys BD, Kesselman C, Valerius MT, McMahon AP, Shankland SJ, Wertheim JA, White MJV, de Caestecker MP, Drummond IA. Naved BA, et al. Among authors: kesselman c. Kidney Int. 2022 May;101(5):845-853. doi: 10.1016/j.kint.2022.02.023. Epub 2022 Mar 9. Kidney Int. 2022. PMID: 35276204 Free PMC article.
Regional synapse gain and loss accompany memory formation in larval zebrafish.
Dempsey WP, Du Z, Nadtochiy A, Smith CD, Czajkowski K, Andreev A, Robson DN, Li JM, Applebaum S, Truong TV, Kesselman C, Fraser SE, Arnold DB. Dempsey WP, et al. Among authors: kesselman c. Proc Natl Acad Sci U S A. 2022 Jan 18;119(3):e2107661119. doi: 10.1073/pnas.2107661119. Proc Natl Acad Sci U S A. 2022. PMID: 35031564 Free PMC article.
New system for archiving integrative structures.
Vallat B, Webb B, Fayazi M, Voinea S, Tangmunarunkit H, Ganesan SJ, Lawson CL, Westbrook JD, Kesselman C, Sali A, Berman HM. Vallat B, et al. Among authors: kesselman c. Acta Crystallogr D Struct Biol. 2021 Dec 1;77(Pt 12):1486-1496. doi: 10.1107/S2059798321010871. Epub 2021 Nov 29. Acta Crystallogr D Struct Biol. 2021. PMID: 34866606 Free PMC article.
Bayesian metamodeling of complex biological systems across varying representations.
Raveh B, Sun L, White KL, Sanyal T, Tempkin J, Zheng D, Bharath K, Singla J, Wang C, Zhao J, Li A, Graham NA, Kesselman C, Stevens RC, Sali A. Raveh B, et al. Among authors: kesselman c. Proc Natl Acad Sci U S A. 2021 Aug 31;118(35):e2104559118. doi: 10.1073/pnas.2104559118. Proc Natl Acad Sci U S A. 2021. PMID: 34453000 Free PMC article.
37 results