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IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods.
Vallat B, Webb BM, Westbrook JD, Goddard TD, Hanke CA, Graziadei A, Peisach E, Zalevsky A, Sagendorf J, Tangmunarunkit H, Voinea S, Sekharan M, Yu J, Bonvin AAMJJ, DiMaio F, Hummer G, Meiler J, Tajkhorshid E, Ferrin TE, Lawson CL, Leitner A, Rappsilber J, Seidel CAM, Jeffries CM, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, Velankar S, Schwede T, Trewhella J, Kesselman C, Berman HM, Sali A. Vallat B, et al. Among authors: ferrin te. J Mol Biol. 2024 Mar 18:168546. doi: 10.1016/j.jmb.2024.168546. Online ahead of print. J Mol Biol. 2024. PMID: 38508301 Free article.
Visualizing density maps with UCSF Chimera.
Goddard TD, Huang CC, Ferrin TE. Goddard TD, et al. Among authors: ferrin te. J Struct Biol. 2007 Jan;157(1):281-7. doi: 10.1016/j.jsb.2006.06.010. Epub 2006 Jul 15. J Struct Biol. 2007. PMID: 16963278
Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.
Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD. Sali A, et al. Among authors: ferrin te. Structure. 2015 Jul 7;23(7):1156-67. doi: 10.1016/j.str.2015.05.013. Epub 2015 Jun 18. Structure. 2015. PMID: 26095030 Free PMC article.
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.
Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, Kurisu G, Lawson CL, Leitner A, Markley JL, Meiler J, Montelione GT, Phillips GN Jr, Prisner T, Rappsilber J, Schriemer DC, Schwede T, Seidel CAM, Strutzenberg TS, Svergun DI, Tajkhorshid E, Trewhella J, Vallat B, Velankar S, Vuister GW, Webb B, Westbrook JD, White KL, Sali A. Berman HM, et al. Among authors: ferrin te. Structure. 2019 Dec 3;27(12):1745-1759. doi: 10.1016/j.str.2019.11.002. Epub 2019 Nov 25. Structure. 2019. PMID: 31780431 Free PMC article.
Visualization software for molecular assemblies.
Goddard TD, Ferrin TE. Goddard TD, et al. Among authors: ferrin te. Curr Opin Struct Biol. 2007 Oct;17(5):587-95. doi: 10.1016/j.sbi.2007.06.008. Epub 2007 Aug 28. Curr Opin Struct Biol. 2007. PMID: 17728125 Free PMC article. Review.
UCSF Chimera, MODELLER, and IMP: an integrated modeling system.
Yang Z, Lasker K, Schneidman-Duhovny D, Webb B, Huang CC, Pettersen EF, Goddard TD, Meng EC, Sali A, Ferrin TE. Yang Z, et al. Among authors: ferrin te. J Struct Biol. 2012 Sep;179(3):269-78. doi: 10.1016/j.jsb.2011.09.006. Epub 2011 Sep 22. J Struct Biol. 2012. PMID: 21963794 Free PMC article.
Molecular Visualization on the Holodeck.
Goddard TD, Brilliant AA, Skillman TL, Vergenz S, Tyrwhitt-Drake J, Meng EC, Ferrin TE. Goddard TD, et al. Among authors: ferrin te. J Mol Biol. 2018 Oct 19;430(21):3982-3996. doi: 10.1016/j.jmb.2018.06.040. Epub 2018 Jun 28. J Mol Biol. 2018. PMID: 29964044 Free PMC article. Review.
UCSF ChimeraX: Tools for structure building and analysis.
Meng EC, Goddard TD, Pettersen EF, Couch GS, Pearson ZJ, Morris JH, Ferrin TE. Meng EC, et al. Among authors: ferrin te. Protein Sci. 2023 Nov;32(11):e4792. doi: 10.1002/pro.4792. Protein Sci. 2023. PMID: 37774136 Free PMC article.
96 results