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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling.
Buytaers FE, Verhaegen B, Van Nieuwenhuysen T, Roosens NHC, Vanneste K, Marchal K, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: verhaegen b. Front Microbiol. 2024 Mar 1;15:1330814. doi: 10.3389/fmicb.2024.1330814. eCollection 2024. Front Microbiol. 2024. PMID: 38495515 Free PMC article.
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Saltykova A, Buytaers FE, Denayer S, Verhaegen B, Piérard D, Roosens NHC, Marchal K, De Keersmaecker SCJ. Saltykova A, et al. Among authors: verhaegen b. Int J Mol Sci. 2020 Aug 8;21(16):5688. doi: 10.3390/ijms21165688. Int J Mol Sci. 2020. PMID: 32784459 Free PMC article.
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak.
Buytaers FE, Saltykova A, Mattheus W, Verhaegen B, Roosens NHC, Vanneste K, Laisnez V, Hammami N, Pochet B, Cantaert V, Marchal K, Denayer S, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: verhaegen b. Microb Genom. 2021 Apr;7(4):000547. doi: 10.1099/mgen.0.000547. Microb Genom. 2021. PMID: 33826490 Free PMC article.
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies.
Buytaers FE, Saltykova A, Denayer S, Verhaegen B, Vanneste K, Roosens NHC, Piérard D, Marchal K, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: verhaegen b. Front Microbiol. 2021 Nov 5;12:738284. doi: 10.3389/fmicb.2021.738284. eCollection 2021. Front Microbiol. 2021. PMID: 34803953 Free PMC article.
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
Bogaerts B, Van den Bossche A, Verhaegen B, Delbrassinne L, Mattheus W, Nouws S, Godfroid M, Hoffman S, Roosens NHC, De Keersmaecker SCJ, Vanneste K. Bogaerts B, et al. Among authors: verhaegen b. J Clin Microbiol. 2024 May 8;62(5):e0157623. doi: 10.1128/jcm.01576-23. Epub 2024 Mar 5. J Clin Microbiol. 2024. PMID: 38441926 Free PMC article.
First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015.
Garcia-Graells C, Berbers B, Verhaegen B, Vanneste K, Marchal K, Roosens NHC, Botteldoorn N, De Keersmaecker SCJ. Garcia-Graells C, et al. Among authors: verhaegen b. Int J Food Microbiol. 2020 Jul 2;324:108624. doi: 10.1016/j.ijfoodmicro.2020.108624. Epub 2020 Apr 3. Int J Food Microbiol. 2020. PMID: 32302878 Free article.
35 results