Sun Z - Search Results

1

Sensitive remote homology search by local alignment of small positional embeddings from protein language models.

Johnson SR, Peshwa M, Sun Z. Johnson SR, et al. Among authors: sun z. Elife. 2024 Mar 15;12:RP91415. doi: 10.7554/eLife.91415. Elife. 2024. PMID: 38488154 Free PMC article.

2

Discovery of cytosine deaminases enables base-resolution methylome mapping using a single enzyme.

Vaisvila R, Johnson SR, Yan B, Dai N, Bourkia BM, Chen M, Corrêa IR Jr, Yigit E, Sun Z. Vaisvila R, et al. Among authors: sun z. Mol Cell. 2024 Mar 7;84(5):854-866.e7. doi: 10.1016/j.molcel.2024.01.027. Epub 2024 Feb 22. Mol Cell. 2024. PMID: 38402612 Free article.

3

Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure.

Fuchs RT, Sun Z, Zhuang F, Robb GB. Fuchs RT, et al. Among authors: sun z. PLoS One. 2015 May 5;10(5):e0126049. doi: 10.1371/journal.pone.0126049. eCollection 2015. PLoS One. 2015. PMID: 25942392 Free PMC article.

4

Chemical capping improves template switching and enhances sequencing of small RNAs.

Wulf MG, Maguire S, Dai N, Blondel A, Posfai D, Krishnan K, Sun Z, Guan S, Corrêa IR. Wulf MG, et al. Among authors: sun z. Nucleic Acids Res. 2022 Jan 11;50(1):e2. doi: 10.1093/nar/gkab861. Nucleic Acids Res. 2022. PMID: 34581823 Free PMC article.

5

Nanopore Whole Transcriptome Analysis and Pathogen Surveillance by a Novel Solid-Phase Catalysis Approach.

Fang Y, Changavi A, Yang M, Sun L, Zhang A, Sun D, Sun Z, Zhang B, Xu MQ. Fang Y, et al. Among authors: sun l, sun d, sun z. Adv Sci (Weinh). 2022 Jan;9(3):e2103373. doi: 10.1002/advs.202103373. Epub 2021 Nov 27. Adv Sci (Weinh). 2022. PMID: 34837482 Free PMC article.

6

Structural bias in T4 RNA ligase-mediated 3'-adapter ligation.

Zhuang F, Fuchs RT, Sun Z, Zheng Y, Robb GB. Zhuang F, et al. Among authors: sun z. Nucleic Acids Res. 2012 Apr;40(7):e54. doi: 10.1093/nar/gkr1263. Epub 2012 Jan 12. Nucleic Acids Res. 2012. PMID: 22241775 Free PMC article.

7

Characterization of Cme and Yme thermostable Cas12a orthologs.

Fuchs RT, Curcuru JL, Mabuchi M, Noireterre A, Weigele PR, Sun Z, Robb GB. Fuchs RT, et al. Among authors: sun z. Commun Biol. 2022 Apr 6;5(1):325. doi: 10.1038/s42003-022-03275-2. Commun Biol. 2022. PMID: 35388146 Free PMC article.

8

Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolution while enabling target enrichment.

Yan B, Wang D, Vaisvila R, Sun Z, Ettwiller L. Yan B, et al. Among authors: sun z. Genome Res. 2022 Nov-Dec;32(11-12):2079-2091. doi: 10.1101/gr.277080.122. Epub 2022 Nov 4. Genome Res. 2022. PMID: 36332968 Free PMC article.

9

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA.

Vaisvila R, Ponnaluri VKC, Sun Z, Langhorst BW, Saleh L, Guan S, Dai N, Campbell MA, Sexton BS, Marks K, Samaranayake M, Samuelson JC, Church HE, Tamanaha E, Corrêa IR Jr, Pradhan S, Dimalanta ET, Evans TC Jr, Williams L, Davis TB. Vaisvila R, et al. Among authors: sun z. Genome Res. 2021 Jul;31(7):1280-1289. doi: 10.1101/gr.266551.120. Epub 2021 Jun 17. Genome Res. 2021. PMID: 34140313 Free PMC article.

10

Characterization of BisI Homologs.

Xu SY, Zemlyanskaya EV, Gonchar DA, Sun Z, Weigele P, Fomenkov A, Degtyarev SK, Roberts RJ. Xu SY, et al. Among authors: sun z. Front Microbiol. 2021 Jul 1;12:689929. doi: 10.3389/fmicb.2021.689929. eCollection 2021. Front Microbiol. 2021. PMID: 34276622 Free PMC article.

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