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teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering.
Petersen SD, Levassor L, Pedersen CM, Madsen J, Hansen LG, Zhang J, Haidar AK, Frandsen RJN, Keasling JD, Weber T, Sonnenschein N, K Jensen M. Petersen SD, et al. Among authors: frandsen rjn. PLoS Comput Biol. 2024 Mar 8;20(3):e1011929. doi: 10.1371/journal.pcbi.1011929. eCollection 2024 Mar. PLoS Comput Biol. 2024. PMID: 38457467 Free PMC article.
Editorial: CAZymes in Biorefinery: From Genes to Application.
Contesini FJ, Frandsen RJN, Damasio A. Contesini FJ, et al. Among authors: frandsen rjn. Front Bioeng Biotechnol. 2021 Feb 10;9:622817. doi: 10.3389/fbioe.2021.622817. eCollection 2021. Front Bioeng Biotechnol. 2021. PMID: 33644017 Free PMC article. No abstract available.
Pathway engineering in yeast for synthesizing the complex polyketide bikaverin.
Zhao M, Zhao Y, Yao M, Iqbal H, Hu Q, Liu H, Qiao B, Li C, Skovbjerg CAS, Nielsen JC, Nielsen J, Frandsen RJN, Yuan Y, Boeke JD. Zhao M, et al. Among authors: frandsen rjn. Nat Commun. 2020 Dec 3;11(1):6197. doi: 10.1038/s41467-020-19984-3. Nat Commun. 2020. PMID: 33273470 Free PMC article.
Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex.
Geiser DM, Al-Hatmi AMS, Aoki T, Arie T, Balmas V, Barnes I, Bergstrom GC, Bhattacharyya MK, Blomquist CL, Bowden RL, Brankovics B, Brown DW, Burgess LW, Bushley K, Busman M, Cano-Lira JF, Carrillo JD, Chang HX, Chen CY, Chen W, Chilvers M, Chulze S, Coleman JJ, Cuomo CA, de Beer ZW, de Hoog GS, Del Castillo-Múnera J, Del Ponte EM, Diéguez-Uribeondo J, Di Pietro A, Edel-Hermann V, Elmer WH, Epstein L, Eskalen A, Esposto MC, Everts KL, Fernández-Pavía SP, da Silva GF, Foroud NA, Fourie G, Frandsen RJN, Freeman S, Freitag M, Frenkel O, Fuller KK, Gagkaeva T, Gardiner DM, Glenn AE, Gold SE, Gordon TR, Gregory NF, Gryzenhout M, Guarro J, Gugino BK, Gutierrez S, Hammond-Kosack KE, Harris LJ, Homa M, Hong CF, Hornok L, Huang JW, Ilkit M, Jacobs A, Jacobs K, Jiang C, Jiménez-Gasco MDM, Kang S, Kasson MT, Kazan K, Kennell JC, Kim HS, Kistler HC, Kuldau GA, Kulik T, Kurzai O, Laraba I, Laurence MH, Lee T, Lee YW, Lee YH, Leslie JF, Liew ECY, Lofton LW, Logrieco AF, López-Berges MS, Luque AG, Lysøe E, Ma LJ, Marra RE, Martin FN, May SR, McCormick SP, McGee C, Meis JF, Migheli Q, Mohamed Nor NMI, Monod M, Moretti A, Mostert D, Mulè G, Munaut F, Munkvold GP, Nicholson P, Nucci M, O'Don… See abstract for full author list ➔ Geiser DM, et al. Among authors: frandsen rjn. Phytopathology. 2021 Jul;111(7):1064-1079. doi: 10.1094/PHYTO-08-20-0330-LE. Epub 2021 Sep 9. Phytopathology. 2021. PMID: 33200960 Free article.
No to Neocosmospora: Phylogenomic and Practical Reasons for Continued Inclusion of the Fusarium solani Species Complex in the Genus Fusarium.
O'Donnell K, Al-Hatmi AMS, Aoki T, Brankovics B, Cano-Lira JF, Coleman JJ, de Hoog GS, Di Pietro A, Frandsen RJN, Geiser DM, Gibas CFC, Guarro J, Kim HS, Kistler HC, Laraba I, Leslie JF, López-Berges MS, Lysøe E, Meis JF, Monod M, Proctor RH, Rep M, Ruiz-Roldán C, Šišić A, Stajich JE, Steenkamp ET, Summerell BA, van der Lee TAJ, van Diepeningen AD, Verweij PE, Waalwijk C, Ward TJ, Wickes BL, Wiederhold NP, Wingfield MJ, Zhang N, Zhang SX. O'Donnell K, et al. Among authors: frandsen rjn. mSphere. 2020 Sep 16;5(5):e00810-20. doi: 10.1128/mSphere.00810-20. mSphere. 2020. PMID: 32938701 Free PMC article.
Infection cushions of Fusarium graminearum are fungal arsenals for wheat infection.
Mentges M, Glasenapp A, Boenisch M, Malz S, Henrissat B, Frandsen RJN, Güldener U, Münsterkötter M, Bormann J, Lebrun MH, Schäfer W, Martinez-Rocha AL. Mentges M, et al. Among authors: frandsen rjn. Mol Plant Pathol. 2020 Aug;21(8):1070-1087. doi: 10.1111/mpp.12960. Epub 2020 Jun 23. Mol Plant Pathol. 2020. PMID: 32573086 Free PMC article.
Programmable polyketide biosynthesis platform for production of aromatic compounds in yeast.
Jakočiūnas T, Klitgaard AK, Kontou EE, Nielsen JB, Thomsen E, Romero-Suarez D, Blin K, Petzold CJ, Gin JW, Tong Y, Gotfredsen CH, Charusanti P, Frandsen RJN, Weber T, Lee SY, Jensen MK, Keasling JD. Jakočiūnas T, et al. Among authors: frandsen rjn. Synth Syst Biotechnol. 2020 Jan 23;5(1):11-18. doi: 10.1016/j.synbio.2020.01.004. eCollection 2020 Mar. Synth Syst Biotechnol. 2020. PMID: 32021916 Free PMC article.
42 results