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Autophagy Contributes to Homeostasis in Esophageal Epithelium Where High Autophagic Vesicle Level Marks Basal Cells With Limited Proliferation and Enhanced Self-Renewal Potential.
Klochkova A, Karami AL, Fuller AD, Parham LR, Panchani SR, Natarajan S, Jackson JL, Mu A, Tan Y, Cai KQ, Klein-Szanto AJ, Muir AB, Tétreault MP, Graña X, Hamilton KE, Whelan KA. Klochkova A, et al. Among authors: hamilton ke. Cell Mol Gastroenterol Hepatol. 2024 Mar 5;18(1):15-40. doi: 10.1016/j.jcmgh.2024.02.018. Online ahead of print. Cell Mol Gastroenterol Hepatol. 2024. PMID: 38452871 Free PMC article.
The Esophageal Organoid System Reveals Functional Interplay Between Notch and Cytokines in Reactive Epithelial Changes.
Kasagi Y, Chandramouleeswaran PM, Whelan KA, Tanaka K, Giroux V, Sharma M, Wang J, Benitez AJ, DeMarshall M, Tobias JW, Hamilton KE, Falk GW, Spergel JM, Klein-Szanto AJ, Rustgi AK, Muir AB, Nakagawa H. Kasagi Y, et al. Among authors: hamilton ke. Cell Mol Gastroenterol Hepatol. 2018 Jan 3;5(3):333-352. doi: 10.1016/j.jcmgh.2017.12.013. eCollection 2018 Mar. Cell Mol Gastroenterol Hepatol. 2018. PMID: 29552622 Free PMC article.
CD73+ Epithelial Progenitor Cells That Contribute to Homeostasis and Renewal Are Depleted in Eosinophilic Esophagitis.
Hara T, Kasagi Y, Wang J, Sasaki M, Aaron B, Karami A, Shimonosono M, Shimonosono R, Maekawa H, Dolinsky L, Wilkins B, Klein J, Wei J, Nunes K, Lynch K, Spergel JM, Hamilton KE, Ruffner MA, Karakasheva TA, Whelan KA, Nakagawa H, Muir AB. Hara T, et al. Among authors: hamilton ke. Cell Mol Gastroenterol Hepatol. 2022;13(5):1449-1467. doi: 10.1016/j.jcmgh.2022.01.018. Epub 2022 Jan 30. Cell Mol Gastroenterol Hepatol. 2022. PMID: 35108658 Free PMC article.
RNA regulons are essential in intestinal homeostasis.
Parham LR, Williams PA, Chatterji P, Whelan KA, Hamilton KE. Parham LR, et al. Among authors: hamilton ke. Am J Physiol Gastrointest Liver Physiol. 2019 Jan 1;316(1):G197-G204. doi: 10.1152/ajpgi.00403.2017. Epub 2018 Dec 6. Am J Physiol Gastrointest Liver Physiol. 2019. PMID: 30520692 Free PMC article. Review.
Single cell transcriptomic analysis reveals cellular diversity of murine esophageal epithelium.
Kabir MF, Karami AL, Cruz-Acuña R, Klochkova A, Saxena R, Mu A, Murray MG, Cruz J, Fuller AD, Clevenger MH, Chitrala KN, Tan Y, Keith K, Madzo J, Huang H, Jelinek J, Karakasheva T, Hamilton KE, Muir AB, Tétreault MP, Whelan KA. Kabir MF, et al. Among authors: hamilton ke. Nat Commun. 2022 Apr 20;13(1):2167. doi: 10.1038/s41467-022-29747-x. Nat Commun. 2022. PMID: 35443762 Free PMC article.
Autophagic state prospectively identifies facultative stem cells in the intestinal epithelium.
Johnson NM, Parham LR, Na J, Monaghan KE, Kolev HM, Klochkova A, Kim MS, Danan CH, Cramer Z, Simon LA, Naughton KE, Adams-Tzivelekidis S, Tian Y, Williams PA, Leu NA, Sidoli S, Whelan KA, Li N, Lengner CJ, Hamilton KE. Johnson NM, et al. Among authors: hamilton ke. EMBO Rep. 2022 Nov 7;23(11):e55209. doi: 10.15252/embr.202255209. Epub 2022 Sep 19. EMBO Rep. 2022. PMID: 36120829 Free PMC article.
Autophagy contributes to homeostasis in esophageal epithelium where high autophagic vesicle content marks basal cells with limited proliferation and enhanced self-renewal potential.
Klochkova A, Karami AL, Fuller AD, Parham LR, Panchani SR, Natarajan S, Jackson JL, Mu A, Tan Y, Cai KQ, Klein-Szanto AJ, Muir AB, Tétreault MP, Hamilton KE, Whelan KA. Klochkova A, et al. Among authors: hamilton ke. bioRxiv [Preprint]. 2023 Sep 22:2023.09.20.558614. doi: 10.1101/2023.09.20.558614. bioRxiv. 2023. PMID: 37781581 Free PMC article. Updated. Preprint.
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