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PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
PLoS Comput Biol. 2024 Mar 25;20(3):e1011814. doi: 10.1371/journal.pcbi.1011814. eCollection 2024 Mar.
PLoS Comput Biol. 2024.
PMID: 38527092
Free PMC article.
Genome scale metabolic network modelling for metabolic profile predictions.
Cooke J, Delmas M, Wieder C, Rodríguez Mier P, Frainay C, Vinson F, Ebbels T, Poupin N, Jourdan F.
Cooke J, et al. Among authors: wieder c.
PLoS Comput Biol. 2024 Feb 22;20(2):e1011381. doi: 10.1371/journal.pcbi.1011381. eCollection 2024 Feb.
PLoS Comput Biol. 2024.
PMID: 38386685
Free PMC article.
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PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
Wieder C, Cooke J, Frainay C, Poupin N, Bowler R, Jourdan F, Kechris KJ, Lai RP, Ebbels T.
Wieder C, et al.
bioRxiv [Preprint]. 2024 Jan 9:2024.01.09.574780. doi: 10.1101/2024.01.09.574780.
bioRxiv. 2024.
PMID: 38260498
Free PMC article.
Updated.
Preprint.
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Single sample pathway analysis in metabolomics: performance evaluation and application.
Wieder C, Lai RPJ, Ebbels TMD.
Wieder C, et al.
BMC Bioinformatics. 2022 Nov 14;23(1):481. doi: 10.1186/s12859-022-05005-1.
BMC Bioinformatics. 2022.
PMID: 36376837
Free PMC article.
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Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics.
Wieder C, Bundy JG, Frainay C, Poupin N, Rodríguez-Mier P, Vinson F, Cooke J, Lai RPJ, Jourdan F, Ebbels TMD.
Wieder C, et al.
Environ Sci Technol. 2022 Oct 18;56(20):14219-14222. doi: 10.1021/acs.est.2c05588. Epub 2022 Sep 26.
Environ Sci Technol. 2022.
PMID: 36162120
Free PMC article.
No abstract available.
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Characterisation of ascocorynin biosynthesis in the purple jellydisc fungus Ascocoryne sarcoides.
Wieder C, Peres da Silva R, Witts J, Jäger CM, Geib E, Brock M.
Wieder C, et al.
Fungal Biol Biotechnol. 2022 Apr 27;9(1):8. doi: 10.1186/s40694-022-00138-7.
Fungal Biol Biotechnol. 2022.
PMID: 35477441
Free PMC article.
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Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis.
Wieder C, Frainay C, Poupin N, Rodríguez-Mier P, Vinson F, Cooke J, Lai RP, Bundy JG, Jourdan F, Ebbels T.
Wieder C, et al.
PLoS Comput Biol. 2021 Sep 7;17(9):e1009105. doi: 10.1371/journal.pcbi.1009105. eCollection 2021 Sep.
PLoS Comput Biol. 2021.
PMID: 34492007
Free PMC article.
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