Gertz EM - Search Results

1

Chromosome 7 to the rescue: overcoming chromosome 10 loss in gliomas.

Nair NU, Schäffer AA, Gertz EM, Cheng K, Zerbib J, Sahu AD, Leor G, Shulman ED, Aldape KD, Ben-David U, Ruppin E. Nair NU, et al. Among authors: gertz em. bioRxiv [Preprint]. 2024 Jan 22:2024.01.17.576103. doi: 10.1101/2024.01.17.576103. bioRxiv. 2024. PMID: 38313282 Free PMC article. Preprint.

2

Predicting cancer prognosis and drug response from the tumor microbiome.

Hermida LC, Gertz EM, Ruppin E. Hermida LC, et al. Among authors: gertz em. Nat Commun. 2022 May 24;13(1):2896. doi: 10.1038/s41467-022-30512-3. Nat Commun. 2022. PMID: 35610202 Free PMC article.

3

Deconvolving Clinically Relevant Cellular Immune Cross-talk from Bulk Gene Expression Using CODEFACS and LIRICS Stratifies Patients with Melanoma to Anti-PD-1 Therapy.

Wang K, Patkar S, Lee JS, Gertz EM, Robinson W, Schischlik F, Crawford DR, Schäffer AA, Ruppin E. Wang K, et al. Among authors: gertz em. Cancer Discov. 2022 Apr 1;12(4):1088-1105. doi: 10.1158/2159-8290.CD-21-0887. Cancer Discov. 2022. PMID: 34983745 Free PMC article.

4

Comparative analysis of genome sequences of the Th2 cytokine region of rabbit (Oryctolagus cuniculus) with those of nine different species.

Gertz EM, Agarwala R, Mage RG, Schäffer AA. Gertz EM, et al. Immunol Immunogenet Insights. 2011;3:59-82. doi: 10.4137/III.S7236. Epub 2011 Jun 12. Immunol Immunogenet Insights. 2011. PMID: 23239928 Free PMC article.

5

Integration of adeno-associated virus (AAV) into the genomes of most Thai and Mongolian liver cancer patients does not induce oncogenesis.

Schäffer AA, Dominguez DA, Chapman LM, Gertz EM, Budhu A, Forgues M, Chaisaingmongkol J, Rabibhadana S, Pupacdi B, Wu X, Bayarsaikhan E, Harris CC, Ruchirawat M, Ruppin E, Wang XW. Schäffer AA, et al. Among authors: gertz em. BMC Genomics. 2021 Nov 11;22(1):814. doi: 10.1186/s12864-021-08098-9. BMC Genomics. 2021. PMID: 34763675 Free PMC article.

6

Inferring models of multiscale copy number evolution for single-tumor phylogenetics.

Chowdhury SA, Gertz EM, Wangsa D, Heselmeyer-Haddad K, Ried T, Schäffer AA, Schwartz R. Chowdhury SA, et al. Among authors: gertz em. Bioinformatics. 2015 Jun 15;31(12):i258-67. doi: 10.1093/bioinformatics/btv233. Bioinformatics. 2015. PMID: 26072490 Free PMC article.

7

Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST.

Gertz EM, Yu YK, Agarwala R, Schäffer AA, Altschul SF. Gertz EM, et al. BMC Biol. 2006 Dec 7;4:41. doi: 10.1186/1741-7007-4-41. BMC Biol. 2006. PMID: 17156431 Free PMC article.

8

Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism.

Rogozin IB, Gertz EM, Baranov PV, Poliakov E, Schaffer AA. Rogozin IB, et al. Among authors: gertz em. Genome Biol Evol. 2018 Aug 1;10(8):1902-1919. doi: 10.1093/gbe/evy146. Genome Biol Evol. 2018. PMID: 29986017 Free PMC article.

9

WindowMasker: window-based masker for sequenced genomes.

Morgulis A, Gertz EM, Schäffer AA, Agarwala R. Morgulis A, et al. Among authors: gertz em. Bioinformatics. 2006 Jan 15;22(2):134-41. doi: 10.1093/bioinformatics/bti774. Epub 2005 Nov 15. Bioinformatics. 2006. PMID: 16287941

10

A fast and symmetric DUST implementation to mask low-complexity DNA sequences.

Morgulis A, Gertz EM, Schäffer AA, Agarwala R. Morgulis A, et al. Among authors: gertz em. J Comput Biol. 2006 Jun;13(5):1028-40. doi: 10.1089/cmb.2006.13.1028. J Comput Biol. 2006. PMID: 16796549

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