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Examining DNA Breathing with pyDNA-EPBD.
Kabir A, Bhattarai M, Rasmussen KØ, Shehu A, Usheva A, Bishop AR, Alexandrov BS. Kabir A, et al. Among authors: alexandrov bs. bioRxiv [Preprint]. 2023 Sep 12:2023.09.09.557010. doi: 10.1101/2023.09.09.557010. bioRxiv. 2023. PMID: 37745370 Free PMC article. Updated. Preprint.
Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics.
Nowak-Lovato K, Alexandrov LB, Banisadr A, Bauer AL, Bishop AR, Usheva A, Mu F, Hong-Geller E, Rasmussen KØ, Hlavacek WS, Alexandrov BS. Nowak-Lovato K, et al. Among authors: alexandrov bs, alexandrov lb. PLoS Comput Biol. 2013;9(1):e1002881. doi: 10.1371/journal.pcbi.1002881. Epub 2013 Jan 17. PLoS Comput Biol. 2013. PMID: 23341768 Free PMC article.
DNA Breathing Dynamics in the Presence of a Terahertz Field.
Alexandrov BS, Gelev V, Bishop AR, Usheva A, Rasmussen KO. Alexandrov BS, et al. Phys Lett A. 2010 Feb 22;374(10):1214. doi: 10.1016/j.physleta.2009.12.077. Phys Lett A. 2010. PMID: 20174451 Free PMC article.
Examining DNA breathing with pyDNA-EPBD.
Kabir A, Bhattarai M, Rasmussen KØ, Shehu A, Usheva A, Bishop AR, Alexandrov B. Kabir A, et al. Among authors: alexandrov b. Bioinformatics. 2023 Nov 1;39(11):btad699. doi: 10.1093/bioinformatics/btad699. Bioinformatics. 2023. PMID: 37991847 Free PMC article.
A nonlinear dynamic model of DNA with a sequence-dependent stacking term.
Alexandrov BS, Gelev V, Monisova Y, Alexandrov LB, Bishop AR, Rasmussen KØ, Usheva A. Alexandrov BS, et al. Among authors: alexandrov lb. Nucleic Acids Res. 2009 Apr;37(7):2405-10. doi: 10.1093/nar/gkp016. Epub 2009 Mar 5. Nucleic Acids Res. 2009. PMID: 19264801 Free PMC article.
Pre-melting dynamics of DNA and its relation to specific functions.
Alexandrov B, Voulgarakis NK, Rasmussen KO, Usheva A, Bishop AR. Alexandrov B, et al. J Phys Condens Matter. 2009 Jan 21;21(3):034107. doi: 10.1088/0953-8984/21/3/034107. Epub 2008 Dec 17. J Phys Condens Matter. 2009. PMID: 21817252
48 results