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Binding profiles for 954 Drosophila and C. elegans transcription factors reveal tissue specific regulatory relationships.
bioRxiv [Preprint]. 2024 Jan 20:2024.01.18.576242. doi: 10.1101/2024.01.18.576242.
bioRxiv. 2024.
PMID: 38293065
Free PMC article.
Preprint.
The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.
Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH.
Kudron MM, et al.
Genetics. 2018 Mar;208(3):937-949. doi: 10.1534/genetics.117.300657. Epub 2017 Dec 28.
Genetics. 2018.
PMID: 29284660
Free PMC article.
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To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq.
Xu J, Kudron MM, Victorsen A, Gao J, Ammouri HN, Navarro FCP, Gevirtzman L, Waterston RH, White KP, Reinke V, Gerstein M.
Xu J, et al. Among authors: kudron mm.
Nucleic Acids Res. 2021 Feb 22;49(3):e17. doi: 10.1093/nar/gkaa1155.
Nucleic Acids Res. 2021.
PMID: 33347581
Free PMC article.
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Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs.
Kudron M, Niu W, Lu Z, Wang G, Gerstein M, Snyder M, Reinke V.
Kudron M, et al.
Genome Biol. 2013 Jan 23;14(1):R5. doi: 10.1186/gb-2013-14-1-r5.
Genome Biol. 2013.
PMID: 23347407
Free PMC article.
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C. elegans nucleostemin is required for larval growth and germline stem cell division.
Kudron MM, Reinke V.
Kudron MM, et al.
PLoS Genet. 2008 Aug 22;4(8):e1000181. doi: 10.1371/journal.pgen.1000181.
PLoS Genet. 2008.
PMID: 18725931
Free PMC article.
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A novel small molecule that disrupts a key event during the oocyte-to-embryo transition in C. elegans.
Weicksel SE, Mahadav A, Moyle M, Cipriani PG, Kudron M, Pincus Z, Bahmanyar S, Abriola L, Merkel J, Gutwein M, Fernandez AG, Piano F, Gunsalus KC, Reinke V.
Weicksel SE, et al. Among authors: kudron m.
Development. 2016 Oct 1;143(19):3540-3548. doi: 10.1242/dev.140046. Epub 2016 Aug 10.
Development. 2016.
PMID: 27510972
Free PMC article.
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Identification of an RNA Polymerase III Regulator Linked to Disease-Associated Protein Aggregation.
Sin O, de Jong T, Mata-Cabana A, Kudron M, Zaini MA, Aprile FA, Seinstra RI, Stroo E, Prins RW, Martineau CN, Wang HH, Hogewerf W, Steinhof A, Wanker EE, Vendruscolo M, Calkhoven CF, Reinke V, Guryev V, Nollen EA.
Sin O, et al. Among authors: kudron m.
Mol Cell. 2017 Mar 16;65(6):1096-1108.e6. doi: 10.1016/j.molcel.2017.02.022.
Mol Cell. 2017.
PMID: 28306505
Free PMC article.
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RecA dimers serve as a functional unit for assembly of active nucleoprotein filaments.
Forget AL, Kudron MM, McGrew DA, Calmann MA, Schiffer CA, Knight KL.
Forget AL, et al. Among authors: kudron mm.
Biochemistry. 2006 Nov 14;45(45):13537-42. doi: 10.1021/bi060938q.
Biochemistry. 2006.
PMID: 17087507
Free PMC article.
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