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Viral Communities Contribute More to the Lysis of Antibiotic-Resistant Bacteria than the Transduction of Antibiotic Resistance Genes in Anaerobic Digestion Revealed by Metagenomics.
Environ Sci Technol. 2024 Feb 6;58(5):2346-2359. doi: 10.1021/acs.est.3c07664. Epub 2024 Jan 24.
Environ Sci Technol. 2024.
PMID: 38267392
Free PMC article.
Enrichment of Anaerobic Microbial Communities from Midgut and Hindgut of Sun Beetle Larvae (Pachnoda marginata) on Wheat Straw: Effect of Inoculum Preparation.
Schroeder BG, Logroño W, Rocha UND, Harms H, Nikolausz M.
Schroeder BG, et al. Among authors: rocha und.
Microorganisms. 2022 Mar 31;10(4):761. doi: 10.3390/microorganisms10040761.
Microorganisms. 2022.
PMID: 35456811
Free PMC article.
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Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater.
Abdulkadir N, Saraiva JP, Zhang J, Stolte S, Gillor O, Harms H, Rocha U.
Abdulkadir N, et al.
Microbiol Spectr. 2024 Mar 5;12(3):e0291823. doi: 10.1128/spectrum.02918-23. Epub 2024 Jan 30.
Microbiol Spectr. 2024.
PMID: 38289113
Free PMC article.
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Identification of Huge Phages from Wastewater Metagenomes.
Kallies R, Hu D, Abdulkadir N, Schloter M, Rocha U.
Kallies R, et al.
Viruses. 2023 Nov 28;15(12):2330. doi: 10.3390/v15122330.
Viruses. 2023.
PMID: 38140571
Free PMC article.
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MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.
Rocha U, Coelho Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Štefanič P, Bicalho MF, Borim Correa F, Baştürk MN, Fousekis E, Viana Barbosa LM, Plewka J, Probst AJ, Baldrian P, Stadler PF; CLUE-TERRA Consortium.
Rocha U, et al.
Mol Ecol Resour. 2024 Feb;24(2):e13904. doi: 10.1111/1755-0998.13904. Epub 2023 Nov 23.
Mol Ecol Resour. 2024.
PMID: 37994269
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Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon.
Silva SG, Nabhan Homsi M, Keller-Costa T, Rocha U, Costa R.
Silva SG, et al.
mSystems. 2023 Dec 21;8(6):e0064323. doi: 10.1128/msystems.00643-23. Epub 2023 Nov 29.
mSystems. 2023.
PMID: 38018967
Free PMC article.
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BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification.
Avila Santos AP, de Almeida BLS, Bonidia RP, Stadler PF, Stefanic P, Mandic-Mulec I, Rocha U, Sanches DS, de Carvalho ACPLF.
Avila Santos AP, et al.
RNA Biol. 2024 Jan;21(1):1-12. doi: 10.1080/15476286.2024.2329451. Epub 2024 Mar 25.
RNA Biol. 2024.
PMID: 38528797
Free PMC article.
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