O'Malley MA - Search Results

1

Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen.

Liu N, Kivenson V, Peng X, Cui Z, Lankiewicz TS, Gosselin KM, English CJ, Blair EM, O'Malley MA, Valentine DL. Liu N, et al. Among authors: o malley ma. Appl Environ Microbiol. 2024 Feb 21;90(2):e0091423. doi: 10.1128/aem.00914-23. Epub 2024 Jan 24. Appl Environ Microbiol. 2024. PMID: 38265213 Free PMC article.

2

Genomic analysis of methanogenic archaea reveals a shift towards energy conservation.

Gilmore SP, Henske JK, Sexton JA, Solomon KV, Seppälä S, Yoo JI, Huyett LM, Pressman A, Cogan JZ, Kivenson V, Peng X, Tan Y, Valentine DL, O'Malley MA. Gilmore SP, et al. BMC Genomics. 2017 Aug 21;18(1):639. doi: 10.1186/s12864-017-4036-4. BMC Genomics. 2017. PMID: 28826405 Free PMC article.

3

Methods for Genomic Characterization and Maintenance of Anaerobic Fungi.

Peng X, Swift CL, Theodorou MK, O'Malley MA. Peng X, et al. Methods Mol Biol. 2018;1775:53-67. doi: 10.1007/978-1-4939-7804-5_5. Methods Mol Biol. 2018. PMID: 29876808

4

Harnessing Nature's Anaerobes for Biotechnology and Bioprocessing.

Podolsky IA, Seppälä S, Lankiewicz TS, Brown JL, Swift CL, O'Malley MA. Podolsky IA, et al. Annu Rev Chem Biomol Eng. 2019 Jun 7;10:105-128. doi: 10.1146/annurev-chembioeng-060718-030340. Epub 2019 Mar 18. Annu Rev Chem Biomol Eng. 2019. PMID: 30883214 Review.

5

Top-Down Enrichment Guides in Formation of Synthetic Microbial Consortia for Biomass Degradation.

Gilmore SP, Lankiewicz TS, Wilken SE, Brown JL, Sexton JA, Henske JK, Theodorou MK, Valentine DL, O'Malley MA. Gilmore SP, et al. ACS Synth Biol. 2019 Sep 20;8(9):2174-2185. doi: 10.1021/acssynbio.9b00271. Epub 2019 Sep 4. ACS Synth Biol. 2019. PMID: 31461261

6

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi.

Wilken SE, Seppälä S, Lankiewicz TS, Saxena M, Henske JK, Salamov AA, Grigoriev IV, O'Malley MA. Wilken SE, et al. Metab Eng Commun. 2019 Nov 15;10:e00107. doi: 10.1016/j.mec.2019.e00107. eCollection 2020 Jun. Metab Eng Commun. 2019. PMID: 31799118 Free PMC article.

7

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes.

Peng X, Wilken SE, Lankiewicz TS, Gilmore SP, Brown JL, Henske JK, Swift CL, Salamov A, Barry K, Grigoriev IV, Theodorou MK, Valentine DL, O'Malley MA. Peng X, et al. Nat Microbiol. 2021 Apr;6(4):499-511. doi: 10.1038/s41564-020-00861-0. Epub 2021 Feb 1. Nat Microbiol. 2021. PMID: 33526884 Free PMC article.

8

Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus.

Wilken SE, Monk JM, Leggieri PA, Lawson CE, Lankiewicz TS, Seppälä S, Daum CG, Jenkins J, Lipzen AM, Mondo SJ, Barry KW, Grigoriev IV, Henske JK, Theodorou MK, Palsson BO, Petzold LR, O'Malley MA. Wilken SE, et al. mSystems. 2021 Feb 16;6(1):e00002-21. doi: 10.1128/mSystems.00002-21. mSystems. 2021. PMID: 33594000 Free PMC article.

9

Ecology and molecular targets of hypermutation in the global microbiome.

Roux S, Paul BG, Bagby SC, Nayfach S, Allen MA, Attwood G, Cavicchioli R, Chistoserdova L, Gruninger RJ, Hallam SJ, Hernandez ME, Hess M, Liu WT, McAllister TA, O'Malley MA, Peng X, Rich VI, Saleska SR, Eloe-Fadrosh EA. Roux S, et al. Nat Commun. 2021 May 24;12(1):3076. doi: 10.1038/s41467-021-23402-7. Nat Commun. 2021. PMID: 34031405 Free PMC article.

10

Non-destructive quantification of anaerobic gut fungi and methanogens in co-culture reveals increased fungal growth rate and changes in metabolic flux relative to mono-culture.

Leggieri PA, Kerdman-Andrade C, Lankiewicz TS, Valentine MT, O'Malley MA. Leggieri PA, et al. Microb Cell Fact. 2021 Oct 18;20(1):199. doi: 10.1186/s12934-021-01684-2. Microb Cell Fact. 2021. PMID: 34663313 Free PMC article.

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