Nielsen M - Search Results

1

MARS an improved de novo peptide candidate selection method for non-canonical antigen target discovery in cancer.

Liao H, Barra C, Zhou Z, Peng X, Woodhouse I, Tailor A, Parker R, Carré A, Borrow P, Hogan MJ, Paes W, Eisenlohr LC, Mallone R, Nielsen M, Ternette N. Liao H, et al. Among authors: nielsen m. Nat Commun. 2024 Jan 22;15(1):661. doi: 10.1038/s41467-023-44460-z. Nat Commun. 2024. PMID: 38253617 Free PMC article.

2

Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells.

Ternette N, Yang H, Partridge T, Llano A, Cedeño S, Fischer R, Charles PD, Dudek NL, Mothe B, Crespo M, Fischer WM, Korber BT, Nielsen M, Borrow P, Purcell AW, Brander C, Dorrell L, Kessler BM, Hanke T. Ternette N, et al. Among authors: nielsen m. Eur J Immunol. 2016 Jan;46(1):60-9. doi: 10.1002/eji.201545890. Epub 2015 Nov 4. Eur J Immunol. 2016. PMID: 26467324 Free PMC article.

3

Improved Prediction of Bovine Leucocyte Antigens (BoLA) Presented Ligands by Use of Mass-Spectrometry-Determined Ligand and in Vitro Binding Data.

Nielsen M, Connelley T, Ternette N. Nielsen M, et al. J Proteome Res. 2018 Jan 5;17(1):559-567. doi: 10.1021/acs.jproteome.7b00675. Epub 2017 Nov 14. J Proteome Res. 2018. PMID: 29115832 Free PMC article.

4

An Analysis of Natural T Cell Responses to Predicted Tumor Neoepitopes.

Bjerregaard AM, Nielsen M, Jurtz V, Barra CM, Hadrup SR, Szallasi Z, Eklund AC. Bjerregaard AM, et al. Among authors: nielsen m. Front Immunol. 2017 Nov 15;8:1566. doi: 10.3389/fimmu.2017.01566. eCollection 2017. Front Immunol. 2017. PMID: 29187854 Free PMC article.

5

Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes.

Alvarez B, Barra C, Nielsen M, Andreatta M. Alvarez B, et al. Among authors: nielsen m. Proteomics. 2018 Jun;18(12):e1700252. doi: 10.1002/pmic.201700252. Epub 2018 Feb 26. Proteomics. 2018. PMID: 29327813 Free PMC article. Review.

6

Footprints of antigen processing boost MHC class II natural ligand predictions.

Barra C, Alvarez B, Paul S, Sette A, Peters B, Andreatta M, Buus S, Nielsen M. Barra C, et al. Among authors: nielsen m. Genome Med. 2018 Nov 16;10(1):84. doi: 10.1186/s13073-018-0594-6. Genome Med. 2018. PMID: 30446001 Free PMC article.

7

MS-Rescue: A Computational Pipeline to Increase the Quality and Yield of Immunopeptidomics Experiments.

Andreatta M, Nicastri A, Peng X, Hancock G, Dorrell L, Ternette N, Nielsen M. Andreatta M, et al. Among authors: nielsen m. Proteomics. 2019 Feb;19(4):e1800357. doi: 10.1002/pmic.201800357. Epub 2019 Jan 18. Proteomics. 2019. PMID: 30578603

8

NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions.

Alvarez B, Reynisson B, Barra C, Buus S, Ternette N, Connelley T, Andreatta M, Nielsen M. Alvarez B, et al. Among authors: nielsen m. Mol Cell Proteomics. 2019 Dec;18(12):2459-2477. doi: 10.1074/mcp.TIR119.001658. Epub 2019 Oct 2. Mol Cell Proteomics. 2019. PMID: 31578220 Free PMC article.

9

Improved Prediction of MHC II Antigen Presentation through Integration and Motif Deconvolution of Mass Spectrometry MHC Eluted Ligand Data.

Reynisson B, Barra C, Kaabinejadian S, Hildebrand WH, Peters B, Nielsen M. Reynisson B, et al. Among authors: nielsen m. J Proteome Res. 2020 Jun 5;19(6):2304-2315. doi: 10.1021/acs.jproteome.9b00874. Epub 2020 Apr 30. J Proteome Res. 2020. PMID: 32308001

10

Improved prediction of HLA antigen presentation hotspots: Applications for immunogenicity risk assessment of therapeutic proteins.

Attermann AS, Barra C, Reynisson B, Schultz HS, Leurs U, Lamberth K, Nielsen M. Attermann AS, et al. Among authors: nielsen m. Immunology. 2021 Feb;162(2):208-219. doi: 10.1111/imm.13274. Epub 2020 Oct 19. Immunology. 2021. PMID: 33010039 Free PMC article.

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