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LRScaf: improving draft genomes using long noisy reads.
Qin M, Wu S, Li A, Zhao F, Feng H, Ding L, Ruan J. Qin M, et al. Among authors: ruan j. BMC Genomics. 2019 Dec 9;20(1):955. doi: 10.1186/s12864-019-6337-2. BMC Genomics. 2019. PMID: 31818249 Free PMC article.
Population sequencing enhances understanding of tea plant evolution.
Wang X, Feng H, Chang Y, Ma C, Wang L, Hao X, Li A, Cheng H, Wang L, Cui P, Jin J, Wang X, Wei K, Ai C, Zhao S, Wu Z, Li Y, Liu B, Wang GD, Chen L, Ruan J, Yang Y. Wang X, et al. Among authors: ruan j. Nat Commun. 2020 Sep 7;11(1):4447. doi: 10.1038/s41467-020-18228-8. Nat Commun. 2020. PMID: 32895382 Free PMC article.
The nearly complete genome of Ginkgo biloba illuminates gymnosperm evolution.
Liu H, Wang X, Wang G, Cui P, Wu S, Ai C, Hu N, Li A, He B, Shao X, Wu Z, Feng H, Chang Y, Mu D, Hou J, Dai X, Yin T, Ruan J, Cao F. Liu H, et al. Among authors: ruan j. Nat Plants. 2021 Jun;7(6):748-756. doi: 10.1038/s41477-021-00933-x. Epub 2021 Jun 14. Nat Plants. 2021. PMID: 34135482
En Route to Completion: What Is An Ideal Reference Genome?
Pan W, Ruan J. Pan W, et al. Among authors: ruan j. Genomics Proteomics Bioinformatics. 2022 Feb;20(1):1-3. doi: 10.1016/j.gpb.2021.09.001. Epub 2021 Sep 9. Genomics Proteomics Bioinformatics. 2022. PMID: 34509700 Free PMC article. No abstract available.
Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations.
Luo X, Zhou Y, Zhang B, Zhang Y, Wang X, Feng T, Li Z, Cui K, Wang Z, Luo C, Li H, Deng Y, Lu F, Han J, Miao Y, Mao H, Yi X, Ai C, Wu S, Li A, Wu Z, Zhuo Z, Da Giang D, Mitra B, Vahidi MF, Mansoor S, Al-Bayatti SA, Sari EM, Gorkhali NA, Prastowo S, Shafique L, Ye G, Qian Q, Chen B, Shi D, Ruan J, Liu Q. Luo X, et al. Among authors: ruan j. Natl Sci Rev. 2020 Mar;7(3):686-701. doi: 10.1093/nsr/nwaa024. Epub 2020 Feb 17. Natl Sci Rev. 2020. PMID: 34692087 Free PMC article.
The First High-quality Reference Genome of Sika Deer Provides Insights into High-tannin Adaptation.
Xing X, Ai C, Wang T, Li Y, Liu H, Hu P, Wang G, Liu H, Wang H, Zhang R, Zheng J, Wang X, Wang L, Chang Y, Qian Q, Yu J, Tang L, Wu S, Shao X, Li A, Cui P, Zhan W, Zhao S, Wu Z, Shao X, Dong Y, Rong M, Tan Y, Cui X, Chang S, Song X, Yang T, Sun L, Ju Y, Zhao P, Fan H, Liu Y, Wang X, Yang W, Yang M, Wei T, Song S, Xu J, Yue Z, Liang Q, Li C, Ruan J, Yang F. Xing X, et al. Among authors: ruan j. Genomics Proteomics Bioinformatics. 2023 Feb;21(1):203-215. doi: 10.1016/j.gpb.2022.05.008. Epub 2022 Jun 16. Genomics Proteomics Bioinformatics. 2023. PMID: 35718271 Free PMC article.
SMARTdenovo: a de novo assembler using long noisy reads.
Liu H, Wu S, Li A, Ruan J. Liu H, et al. Among authors: ruan j. GigaByte. 2021 Mar 8;2021:gigabyte15. doi: 10.46471/gigabyte.15. eCollection 2021. GigaByte. 2021. PMID: 36824332 Free PMC article.
2,269 results