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Generative aptamer discovery using RaptGen.
Iwano N, Adachi T, Aoki K, Nakamura Y, Hamada M. Iwano N, et al. Among authors: hamada m. Nat Comput Sci. 2022 Jun;2(6):378-386. doi: 10.1038/s43588-022-00249-6. Epub 2022 Jun 2. Nat Comput Sci. 2022. PMID: 38177576 Free PMC article.
Representation learning applications in biological sequence analysis.
Iuchi H, Matsutani T, Yamada K, Iwano N, Sumi S, Hosoda S, Zhao S, Fukunaga T, Hamada M. Iuchi H, et al. Among authors: hamada m. Comput Struct Biotechnol J. 2021 May 23;19:3198-3208. doi: 10.1016/j.csbj.2021.05.039. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34141139 Free PMC article. Review.
Deep generative design of RNA family sequences.
Sumi S, Hamada M, Saito H. Sumi S, et al. Among authors: hamada m. Nat Methods. 2024 Mar;21(3):435-443. doi: 10.1038/s41592-023-02148-8. Epub 2024 Jan 18. Nat Methods. 2024. PMID: 38238559
In silico approaches to RNA aptamer design.
Hamada M. Hamada M. Biochimie. 2018 Feb;145:8-14. doi: 10.1016/j.biochi.2017.10.005. Epub 2017 Oct 12. Biochimie. 2018. PMID: 29032056 Review.
Bioinformatics approaches for unveiling virus-host interactions.
Iuchi H, Kawasaki J, Kubo K, Fukunaga T, Hokao K, Yokoyama G, Ichinose A, Suga K, Hamada M. Iuchi H, et al. Among authors: hamada m. Comput Struct Biotechnol J. 2023;21:1774-1784. doi: 10.1016/j.csbj.2023.02.044. Epub 2023 Feb 27. Comput Struct Biotechnol J. 2023. PMID: 36874163 Free PMC article. Review.
1,962 results