Terada T - Search Results

1

Enhancement of SARS-CoV-2 Infection via Crosslinking of Adjacent Spike Proteins by N-Terminal Domain-Targeting Antibodies.

Lusiany T, Terada T, Kishikawa JI, Hirose M, Chen DV, Sugihara F, Ismanto HS, van Eerden FJ, Li S, Kato T, Arase H, Yoshiharu M, Okada M, Standley DM. Lusiany T, et al. Among authors: terada t. Viruses. 2023 Dec 13;15(12):2421. doi: 10.3390/v15122421. Viruses. 2023. PMID: 38140662 Free PMC article.

2

Rapid Heme Transfer Reactions between NEAr Transporter Domains of Staphylococcus aureus: A Theoretical Study Using QM/MM and MD Simulations.

Moriwaki Y, Terada T, Tsumoto K, Shimizu K. Moriwaki Y, et al. Among authors: terada t. PLoS One. 2015 Dec 14;10(12):e0145125. doi: 10.1371/journal.pone.0145125. eCollection 2015. PLoS One. 2015. PMID: 26658942 Free PMC article.

3

Prediction and analysis of antifreeze proteins.

Miyata R, Moriwaki Y, Terada T, Shimizu K. Miyata R, et al. Among authors: terada t. Heliyon. 2021 Sep 8;7(9):e07953. doi: 10.1016/j.heliyon.2021.e07953. eCollection 2021 Sep. Heliyon. 2021. PMID: 34604556 Free PMC article.

4

Comprehensive computational analysis of the SRK-SP11 molecular interaction underlying self-incompatibility in Brassicaceae using improved structure prediction for cysteine-rich proteins.

Sawa T, Moriwaki Y, Jiang H, Murase K, Takayama S, Shimizu K, Terada T. Sawa T, et al. Among authors: terada t. Comput Struct Biotechnol J. 2023 Oct 20;21:5228-5239. doi: 10.1016/j.csbj.2023.10.026. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37928947 Free PMC article.

5

Substrate recognition mechanism of tRNA-targeting ribonuclease, colicin D, and an insight into tRNA cleavage-mediated translation impairment.

Ogawa T, Takahashi K, Ishida W, Aono T, Hidaka M, Terada T, Masaki H. Ogawa T, et al. Among authors: terada t. RNA Biol. 2021 Aug;18(8):1193-1205. doi: 10.1080/15476286.2020.1838782. Epub 2020 Nov 19. RNA Biol. 2021. PMID: 33211605 Free PMC article.

6

Heme binding mechanism of structurally similar iron-regulated surface determinant near transporter domains of Staphylococcus aureus exhibiting different affinities for heme.

Moriwaki Y, Terada T, Caaveiro JM, Takaoka Y, Hamachi I, Tsumoto K, Shimizu K. Moriwaki Y, et al. Among authors: terada t. Biochemistry. 2013 Dec 10;52(49):8866-77. doi: 10.1021/bi4008325. Epub 2013 Nov 25. Biochemistry. 2013. PMID: 24245481

7

Oligomerization mechanisms of an H-NS family protein, Pmr, encoded on the plasmid pCAR1 provide a molecular basis for functions of H-NS family members.

Suzuki C, Kawazuma K, Horita S, Terada T, Tanokura M, Okada K, Yamane H, Nojiri H. Suzuki C, et al. Among authors: terada t. PLoS One. 2014 Aug 19;9(8):e105656. doi: 10.1371/journal.pone.0105656. eCollection 2014. PLoS One. 2014. PMID: 25137042 Free PMC article.

8

Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01.

Dong X, Fushinobu S, Fukuda E, Terada T, Nakamura S, Shimizu K, Nojiri H, Omori T, Shoun H, Wakagi T. Dong X, et al. Among authors: terada t. J Bacteriol. 2005 Apr;187(7):2483-90. doi: 10.1128/JB.187.7.2483-2490.2005. J Bacteriol. 2005. PMID: 15774891 Free PMC article.

9

Mechanism of the difference in the binding affinity of E. coli tRNAGln to glutaminyl-tRNA synthetase caused by noninterface nucleotides in variable loop.

Yamasaki S, Nakamura S, Terada T, Shimizu K. Yamasaki S, et al. Among authors: terada t. Biophys J. 2007 Jan 1;92(1):192-200. doi: 10.1529/biophysj.106.093351. Epub 2006 Oct 6. Biophys J. 2007. PMID: 17028132 Free PMC article.

10

Coarse-grained molecular dynamics simulations of protein-ligand binding.

Negami T, Shimizu K, Terada T. Negami T, et al. Among authors: terada t. J Comput Chem. 2014 Sep 30;35(25):1835-45. doi: 10.1002/jcc.23693. Epub 2014 Jul 21. J Comput Chem. 2014. PMID: 25043724

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