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An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H. Liu Y, et al. Among authors: li s. Cell. 2021 Jun 24;184(13):3452-3466.e18. doi: 10.1016/j.cell.2021.05.032. Epub 2021 May 24. Cell. 2021. PMID: 34139176 Free PMC article.
An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo.
Ikemura N, Taminishi S, Inaba T, Arimori T, Motooka D, Katoh K, Kirita Y, Higuchi Y, Li S, Suzuki T, Itoh Y, Ozaki Y, Nakamura S, Matoba S, Standley DM, Okamoto T, Takagi J, Hoshino A. Ikemura N, et al. Among authors: li s. Sci Transl Med. 2022 Jun 22;14(650):eabn7737. doi: 10.1126/scitranslmed.abn7737. Epub 2022 Jun 22. Sci Transl Med. 2022. PMID: 35471044 Free PMC article.
Landscape of infection enhancing antibodies in COVID-19 and healthy donors.
Ismanto HS, Xu Z, Saputri DS, Wilamowski J, Li S, Nugraha DK, Horiguchi Y, Okada M, Arase H, Standley DM. Ismanto HS, et al. Among authors: li s. Comput Struct Biotechnol J. 2022;20:6033-6040. doi: 10.1016/j.csbj.2022.11.001. Epub 2022 Nov 4. Comput Struct Biotechnol J. 2022. PMID: 36348766 Free PMC article.
Structural Determinants of the APOBEC3G N-Terminal Domain for HIV-1 RNA Association.
Fukuda H, Li S, Sardo L, Smith JL, Yamashita K, Sarca AD, Shirakawa K, Standley DM, Takaori-Kondo A, Izumi T. Fukuda H, et al. Among authors: li s. Front Cell Infect Microbiol. 2019 May 21;9:129. doi: 10.3389/fcimb.2019.00129. eCollection 2019. Front Cell Infect Microbiol. 2019. PMID: 31165049 Free PMC article.
Methods for sequence and structural analysis of B and T cell receptor repertoires.
Teraguchi S, Saputri DS, Llamas-Covarrubias MA, Davila A, Diez D, Nazlica SA, Rozewicki J, Ismanto HS, Wilamowski J, Xie J, Xu Z, Loza-Lopez MJ, van Eerden FJ, Li S, Standley DM. Teraguchi S, et al. Among authors: li s. Comput Struct Biotechnol J. 2020 Jul 17;18:2000-2011. doi: 10.1016/j.csbj.2020.07.008. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32802272 Free PMC article. Review.
Expression of the readthrough transcript CiDRE in alveolar macrophages boosts SARS-CoV-2 susceptibility and promotes COVID-19 severity.
Mitsui Y, Suzuki T, Kuniyoshi K, Inamo J, Yamaguchi K, Komuro M, Watanabe J, Edamoto M, Li S, Kouno T, Oba S, Hosoya T, Masuhiro K, Naito Y, Koyama S, Sakaguchi N, Standley DM, Shin JW, Akira S, Yasuda S, Miyazaki Y, Kochi Y, Kumanogoh A, Okamoto T, Satoh T. Mitsui Y, et al. Among authors: li s. Immunity. 2023 Aug 8;56(8):1939-1954.e12. doi: 10.1016/j.immuni.2023.06.013. Epub 2023 Jul 12. Immunity. 2023. PMID: 37442134
Structural Modeling of Lymphocyte Receptors and Their Antigens.
Li S, Wilamowski J, Teraguchi S, van Eerden FJ, Rozewicki J, Davila A, Xu Z, Katoh K, Standley DM. Li S, et al. Methods Mol Biol. 2019;2048:207-229. doi: 10.1007/978-1-4939-9728-2_17. Methods Mol Biol. 2019. PMID: 31396940
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