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An evolution-based framework for describing human gut bacteria.
Doran BA, Chen RY, Giba H, Behera V, Barat B, Sundararajan A, Lin H, Sidebottom A, Pamer EG, Raman AS. Doran BA, et al. Among authors: pamer eg. bioRxiv [Preprint]. 2023 Dec 5:2023.12.04.569969. doi: 10.1101/2023.12.04.569969. bioRxiv. 2023. PMID: 38105970 Free PMC article. Preprint.
Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile.
Dong Q, Lin H, Allen MM, Garneau JR, Sia JK, Smith RC, Haro F, McMillen T, Pope RL, Metcalfe C, Burgo V, Woodson C, Dylla N, Kohout C, Sundararajan A, Snitkin ES, Young VB, Fortier LC, Kamboj M, Pamer EG. Dong Q, et al. Among authors: pamer eg. bioRxiv [Preprint]. 2023 Jan 12:2023.01.12.523823. doi: 10.1101/2023.01.12.523823. bioRxiv. 2023. PMID: 36711955 Free PMC article. Updated. Preprint.
Fecal metabolite profiling identifies liver transplant recipients at risk for postoperative infection.
Lehmann CJ, Dylla NP, Odenwald M, Nayak R, Khalid M, Boissiere J, Cantoral J, Adler E, Stutz MR, Dela Cruz M, Moran A, Lin H, Ramaswamy R, Sundararajan A, Sidebottom AM, Little J, Pamer EG, Aronsohn A, Fung J, Baker TB, Kacha A. Lehmann CJ, et al. Among authors: pamer eg. Cell Host Microbe. 2024 Jan 10;32(1):117-130.e4. doi: 10.1016/j.chom.2023.11.016. Epub 2023 Dec 15. Cell Host Microbe. 2024. PMID: 38103544
Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species and strain level diversity and evolution.
Zhang ZJ, Cole CG, Coyne MJ, Lin H, Dylla N, Smith RC, Waligurski E, Ramaswamy R, Woodson C, Burgo V, Little JC, Moran D, Rose A, McMillin M, McSpadden E, Sundararajan A, Sidebottom AM, Pamer EG, Comstock LE. Zhang ZJ, et al. Among authors: pamer eg. bioRxiv [Preprint]. 2024 Mar 9:2024.03.08.584156. doi: 10.1101/2024.03.08.584156. bioRxiv. 2024. PMID: 38496653 Free PMC article. Preprint.
Protection against Clostridioides difficile disease by a naturally avirulent C. difficile strain.
Dong Q, Harper S, McSpadden E, Son SS, Allen MM, Lin H, Smith RC, Metcalfe C, Burgo V, Woodson C, Sundararajan A, Rose A, McMillin M, Moran D, Little J, Mullowney M, Sidebottom AM, Shen A, Fortier LC, Pamer EG. Dong Q, et al. Among authors: pamer eg. bioRxiv [Preprint]. 2024 May 7:2024.05.06.592814. doi: 10.1101/2024.05.06.592814. bioRxiv. 2024. PMID: 38766138 Free PMC article. Preprint.
Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile.
Dong Q, Lin H, Allen MM, Garneau JR, Sia JK, Smith RC, Haro F, McMillen T, Pope RL, Metcalfe C, Burgo V, Woodson C, Dylla N, Kohout C, Sundararajan A, Snitkin ES, Young VB, Fortier LC, Kamboj M, Pamer EG. Dong Q, et al. Among authors: pamer eg. Cell Rep. 2023 Aug 29;42(8):112861. doi: 10.1016/j.celrep.2023.112861. Epub 2023 Jul 30. Cell Rep. 2023. PMID: 37523264 Free PMC article.
Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration.
Little AS, Younker IT, Schechter MS, Bernardino PN, Méheust R, Stemczynski J, Scorza K, Mullowney MW, Sharan D, Waligurski E, Smith R, Ramanswamy R, Leiter W, Moran D, McMillin M, Odenwald MA, Iavarone AT, Sidebottom AM, Sundararajan A, Pamer EG, Eren AM, Light SH. Little AS, et al. Among authors: pamer eg. Nat Microbiol. 2024 Jan;9(1):55-69. doi: 10.1038/s41564-023-01560-2. Epub 2024 Jan 4. Nat Microbiol. 2024. PMID: 38177297
260 results