Manavalan B - Search Results

1

Advancing the accuracy of SARS-CoV-2 phosphorylation site detection via meta-learning approach.

Pham NT, Phan LT, Seo J, Kim Y, Song M, Lee S, Jeon YJ, Manavalan B. Pham NT, et al. Among authors: manavalan b. Brief Bioinform. 2023 Nov 22;25(1):bbad433. doi: 10.1093/bib/bbad433. Brief Bioinform. 2023. PMID: 38058187 Free PMC article.

2

PFDB: A standardized protein folding database with temperature correction.

Manavalan B, Kuwajima K, Lee J. Manavalan B, et al. Sci Rep. 2019 Feb 7;9(1):1588. doi: 10.1038/s41598-018-36992-y. Sci Rep. 2019. PMID: 30733462 Free PMC article.

3

Silica-coated magnetic nanoparticles induce glucose metabolic dysfunction in vitro via the generation of reactive oxygen species.

Shin TH, Seo C, Lee DY, Ji M, Manavalan B, Basith S, Chakkarapani SK, Kang SH, Lee G, Paik MJ, Park CB. Shin TH, et al. Among authors: manavalan b. Arch Toxicol. 2019 May;93(5):1201-1212. doi: 10.1007/s00204-019-02402-z. Epub 2019 Feb 8. Arch Toxicol. 2019. PMID: 30737549

4

Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non-ribosomal peptide synthetases.

Manavalan B, Murugapiran SK, Lee G, Choi S. Manavalan B, et al. BMC Struct Biol. 2010 Jan 12;10:1. doi: 10.1186/1472-6807-10-1. BMC Struct Biol. 2010. PMID: 20067617 Free PMC article.

5

Protein structure modeling and refinement by global optimization in CASP12.

Hong SH, Joung I, Flores-Canales JC, Manavalan B, Cheng Q, Heo S, Kim JY, Lee SY, Nam M, Joo K, Lee IH, Lee SJ, Lee J. Hong SH, et al. Among authors: manavalan b. Proteins. 2018 Mar;86 Suppl 1:122-135. doi: 10.1002/prot.25426. Epub 2017 Dec 5. Proteins. 2018. PMID: 29159837

6

Silica-coated magnetic nanoparticles activate microglia and induce neurotoxic D-serine secretion.

Shin TH, Lee DY, Manavalan B, Basith S, Na YC, Yoon C, Lee HS, Paik MJ, Lee G. Shin TH, et al. Among authors: manavalan b. Part Fibre Toxicol. 2021 Aug 12;18(1):30. doi: 10.1186/s12989-021-00420-3. Part Fibre Toxicol. 2021. PMID: 34384435 Free PMC article.

7

Methods for estimation of model accuracy in CASP12.

Elofsson A, Joo K, Keasar C, Lee J, Maghrabi AHA, Manavalan B, McGuffin LJ, Ménendez Hurtado D, Mirabello C, Pilstål R, Sidi T, Uziela K, Wallner B. Elofsson A, et al. Among authors: manavalan b. Proteins. 2018 Mar;86 Suppl 1:361-373. doi: 10.1002/prot.25395. Epub 2017 Oct 17. Proteins. 2018. PMID: 28975666 Free article.

8

Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools.

Su R, Hu J, Zou Q, Manavalan B, Wei L. Su R, et al. Among authors: manavalan b. Brief Bioinform. 2020 Mar 23;21(2):408-420. doi: 10.1093/bib/bby124. Brief Bioinform. 2020. PMID: 30649170 Review.

9

Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework.

Hasan MM, Basith S, Khatun MS, Lee G, Manavalan B, Kurata H. Hasan MM, et al. Among authors: manavalan b. Brief Bioinform. 2021 May 20;22(3):bbaa202. doi: 10.1093/bib/bbaa202. Brief Bioinform. 2021. PMID: 32910169

10

Computational prediction of species-specific yeast DNA replication origin via iterative feature representation.

Manavalan B, Basith S, Shin TH, Lee G. Manavalan B, et al. Brief Bioinform. 2021 Jul 20;22(4):bbaa304. doi: 10.1093/bib/bbaa304. Brief Bioinform. 2021. PMID: 33232970 Free PMC article.

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