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Constitutive expression of apple endo-POLYGALACTURONASE1 in fruit induces early maturation, alters skin structure and accelerates softening.
Gunaseelan K, Schröder R, Rebstock R, Ninan AS, Deng C, Khanal BP, Favre L, Tomes S, Dragulescu MA, O'Donoghue EM, Hallett IC, Schaffer RJ, Knoche M, Brummell DA, Atkinson RG. Gunaseelan K, et al. Among authors: deng c. Plant J. 2024 Mar;117(5):1413-1431. doi: 10.1111/tpj.16571. Epub 2023 Dec 1. Plant J. 2024. PMID: 38038980
The draft genome sequence of European pear (Pyrus communis L. 'Bartlett').
Chagné D, Crowhurst RN, Pindo M, Thrimawithana A, Deng C, Ireland H, Fiers M, Dzierzon H, Cestaro A, Fontana P, Bianco L, Lu A, Storey R, Knäbel M, Saeed M, Montanari S, Kim YK, Nicolini D, Larger S, Stefani E, Allan AC, Bowen J, Harvey I, Johnston J, Malnoy M, Troggio M, Perchepied L, Sawyer G, Wiedow C, Won K, Viola R, Hellens RP, Brewer L, Bus VG, Schaffer RJ, Gardiner SE, Velasco R. Chagné D, et al. Among authors: deng c. PLoS One. 2014 Apr 3;9(4):e92644. doi: 10.1371/journal.pone.0092644. eCollection 2014. PLoS One. 2014. PMID: 24699266 Free PMC article.
A microRNA allele that emerged prior to apple domestication may underlie fruit size evolution.
Yao JL, Xu J, Cornille A, Tomes S, Karunairetnam S, Luo Z, Bassett H, Whitworth C, Rees-George J, Ranatunga C, Snirc A, Crowhurst R, de Silva N, Warren B, Deng C, Kumar S, Chagné D, Bus VG, Volz RK, Rikkerink EH, Gardiner SE, Giraud T, MacDiarmid R, Gleave AP. Yao JL, et al. Among authors: deng c. Plant J. 2015 Oct;84(2):417-27. doi: 10.1111/tpj.13021. Plant J. 2015. PMID: 26358530 Free article.
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants.
Pilkington SM, Crowhurst R, Hilario E, Nardozza S, Fraser L, Peng Y, Gunaseelan K, Simpson R, Tahir J, Deroles SC, Templeton K, Luo Z, Davy M, Cheng C, McNeilage M, Scaglione D, Liu Y, Zhang Q, Datson P, De Silva N, Gardiner SE, Bassett H, Chagné D, McCallum J, Dzierzon H, Deng C, Wang YY, Barron L, Manako K, Bowen J, Foster TM, Erridge ZA, Tiffin H, Waite CN, Davies KM, Grierson EP, Laing WA, Kirk R, Chen X, Wood M, Montefiori M, Brummell DA, Schwinn KE, Catanach A, Fullerton C, Li D, Meiyalaghan S, Nieuwenhuizen N, Read N, Prakash R, Hunter D, Zhang H, McKenzie M, Knäbel M, Harris A, Allan AC, Gleave A, Chen A, Janssen BJ, Plunkett B, Ampomah-Dwamena C, Voogd C, Leif D, Lafferty D, Souleyre EJF, Varkonyi-Gasic E, Gambi F, Hanley J, Yao JL, Cheung J, David KM, Warren B, Marsh K, Snowden KC, Lin-Wang K, Brian L, Martinez-Sanchez M, Wang M, Ileperuma N, Macnee N, Campin R, McAtee P, Drummond RSM, Espley RV, Ireland HS, Wu R, Atkinson RG, Karunairetnam S, Bulley S, Chunkath S, Hanley Z, Storey R, Thrimawithana AH, Thomson S, David C, Testolin R, Huang H, Hellens RP, Schaffer RJ. Pilkington SM, et al. Among authors: deng c. BMC Genomics. 2018 Apr 16;19(1):257. doi: 10.1186/s12864-018-4656-3. BMC Genomics. 2018. PMID: 29661190 Free PMC article.
Transposon insertions regulate genome-wide allele-specific expression and underpin flower colour variations in apple (Malus spp.).
Tian Y, Thrimawithana A, Ding T, Guo J, Gleave A, Chagné D, Ampomah-Dwamena C, Ireland HS, Schaffer RJ, Luo Z, Wang M, An X, Wang D, Gao Y, Wang K, Zhang H, Zhang R, Zhou Z, Yan Z, Zhang L, Zhang C, Cong P, Deng CH, Yao JL. Tian Y, et al. Among authors: deng ch. Plant Biotechnol J. 2022 Jul;20(7):1285-1297. doi: 10.1111/pbi.13806. Epub 2022 Apr 1. Plant Biotechnol J. 2022. PMID: 35258172 Free PMC article.
First Chromosome-Scale Assembly and Deep Floral-Bud Transcriptome of a Male Kiwifruit.
Tahir J, Crowhurst R, Deroles S, Hilario E, Deng C, Schaffer R, Le Lievre L, Brendolise C, Chagné D, Gardiner SE, Knaebel M, Catanach A, McCallum J, Datson P, Thomson S, Brownfield LR, Nardozza S, Pilkington SM. Tahir J, et al. Among authors: deng c. Front Genet. 2022 May 16;13:852161. doi: 10.3389/fgene.2022.852161. eCollection 2022. Front Genet. 2022. PMID: 35651931 Free PMC article. No abstract available.
5,619 results