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A proteomic meta-analysis refinement of plasma extracellular vesicles.
Vallejo MC, Sarkar S, Elliott EC, Henry HR, Powell SM, Diaz Ludovico I, You Y, Huang F, Payne SH, Ramanadham S, Sims EK, Metz TO, Mirmira RG, Nakayasu ES. Vallejo MC, et al. Among authors: metz to. Sci Data. 2023 Nov 28;10(1):837. doi: 10.1038/s41597-023-02748-1. Sci Data. 2023. PMID: 38017024 Free PMC article.
Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling.
Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, McAteer K, Heffron F, Peterson SN, Motin V, Palsson BO, Smith RD, Adkins JN. Ansong C, et al. Among authors: metz to. Curr Top Microbiol Immunol. 2013;363:21-41. doi: 10.1007/82_2012_247. Curr Top Microbiol Immunol. 2013. PMID: 22886542 Free PMC article. Review.
Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.
Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Among authors: metz to. Mol Cell Proteomics. 2014 Aug 16:mcp.O113.030932. doi: 10.1074/mcp.O113.030932. Online ahead of print. Mol Cell Proteomics. 2014. PMID: 25129695 Free article.
Bayesian proteoform modeling improves protein quantification of global proteomic measurements.
Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Among authors: metz to. Mol Cell Proteomics. 2014 Dec;13(12):3639-46. doi: 10.1074/mcp.M113.030932. Mol Cell Proteomics. 2014. PMID: 25433089 Free PMC article.
MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.
Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO. Nakayasu ES, et al. Among authors: metz to. mSystems. 2016 May 10;1(3):e00043-16. doi: 10.1128/mSystems.00043-16. eCollection 2016 May-Jun. mSystems. 2016. PMID: 27822525 Free PMC article.
MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling.
Burnum-Johnson KE, Kyle JE, Eisfeld AJ, Casey CP, Stratton KG, Gonzalez JF, Habyarimana F, Negretti NM, Sims AC, Chauhan S, Thackray LB, Halfmann PJ, Walters KB, Kim YM, Zink EM, Nicora CD, Weitz KK, Webb-Robertson BM, Nakayasu ES, Ahmer B, Konkel ME, Motin V, Baric RS, Diamond MS, Kawaoka Y, Waters KM, Smith RD, Metz TO. Burnum-Johnson KE, et al. Among authors: metz to. Analyst. 2017 Jan 26;142(3):442-448. doi: 10.1039/c6an02486f. Analyst. 2017. PMID: 28091625 Free PMC article.
LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data.
Kyle JE, Crowell KL, Casey CP, Fujimoto GM, Kim S, Dautel SE, Smith RD, Payne SH, Metz TO. Kyle JE, et al. Among authors: metz to. Bioinformatics. 2017 Jun 1;33(11):1744-1746. doi: 10.1093/bioinformatics/btx046. Bioinformatics. 2017. PMID: 28158427 Free PMC article.
The graphical user interface provides visualization of multiple lines of spectral evidence for each lipid identification, allowing rapid examination of data for making confident identifications of lipid molecular species. LIQUID was compared to other freely available softw …
The graphical user interface provides visualization of multiple lines of spectral evidence for each lipid identification, allowing rapid exa …
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.
Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO. Ma J, et al. Among authors: metz to. Bioinformatics. 2017 Sep 1;33(17):2715-2722. doi: 10.1093/bioinformatics/btx305. Bioinformatics. 2017. PMID: 28505286 Free PMC article.
The primary application presented for this algorithm is the extraction of data that can then be used to create a reference library of experimental CCS values for use in high throughput omics analyses. ...The documentation, source code of the software, and a GUI can be foun …
The primary application presented for this algorithm is the extraction of data that can then be used to create a reference library of …
220 results