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An encyclopedia of enhancer-gene regulatory interactions in the human genome.
Gschwind AR, Mualim KS, Karbalayghareh A, Sheth MU, Dey KK, Jagoda E, Nurtdinov RN, Xi W, Tan AS, Jones H, Ma XR, Yao D, Nasser J, Avsec Ž, James BT, Shamim MS, Durand NC, Rao SSP, Mahajan R, Doughty BR, Andreeva K, Ulirsch JC, Fan K, Perez EM, Nguyen TC, Kelley DR, Finucane HK, Moore JE, Weng Z, Kellis M, Bassik MC, Price AL, Beer MA, Guigó R, Stamatoyannopoulos JA, Lieberman Aiden E, Greenleaf WJ, Leslie CS, Steinmetz LM, Kundaje A, Engreitz JM. Gschwind AR, et al. Among authors: nguyen tc. bioRxiv [Preprint]. 2023 Nov 13:2023.11.09.563812. doi: 10.1101/2023.11.09.563812. bioRxiv. 2023. PMID: 38014075 Free PMC article. Preprint.
Single-cell multiplex chromatin and RNA interactions in aging human brain.
Wen X, Luo Z, Zhao W, Calandrelli R, Nguyen TC, Wan X, Richard JLC, Zhong S. Wen X, et al. Among authors: nguyen tc. bioRxiv [Preprint]. 2024 Mar 4:2023.06.28.546457. doi: 10.1101/2023.06.28.546457. bioRxiv. 2024. PMID: 37425846 Free PMC article. Updated. Preprint.
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).
Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP. Jain S, et al. Nat Cell Biol. 2023 Aug;25(8):1089-1100. doi: 10.1038/s41556-023-01194-w. Epub 2023 Jul 19. Nat Cell Biol. 2023. PMID: 37468756 Free PMC article. Review.
Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).
Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP. Jain S, et al. Nat Cell Biol. 2024 May;26(5):839. doi: 10.1038/s41556-024-01384-0. Nat Cell Biol. 2024. PMID: 38429479 No abstract available.
Systematic Mapping of RNA-Chromatin Interactions In Vivo.
Sridhar B, Rivas-Astroza M, Nguyen TC, Chen W, Yan Z, Cao X, Hebert L, Zhong S. Sridhar B, et al. Among authors: nguyen tc. Curr Biol. 2017 Feb 20;27(4):602-609. doi: 10.1016/j.cub.2017.01.011. Epub 2017 Jan 26. Curr Biol. 2017. PMID: 28132817 Free PMC article.
Revealing protein-protein interactions at the transcriptome scale by sequencing.
Johnson KL, Qi Z, Yan Z, Wen X, Nguyen TC, Zaleta-Rivera K, Chen CJ, Fan X, Sriram K, Wan X, Chen ZB, Zhong S. Johnson KL, et al. Among authors: nguyen tc. Mol Cell. 2021 Oct 7;81(19):4091-4103.e9. doi: 10.1016/j.molcel.2021.07.006. Epub 2021 Aug 3. Mol Cell. 2021. PMID: 34348091 Free PMC article.
RNA, Action through Interactions.
Nguyen TC, Zaleta-Rivera K, Huang X, Dai X, Zhong S. Nguyen TC, et al. Trends Genet. 2018 Nov;34(11):867-882. doi: 10.1016/j.tig.2018.08.001. Epub 2018 Aug 31. Trends Genet. 2018. PMID: 30177410 Free PMC article. Review.
Mapping RNA-chromatin interactions by sequencing with iMARGI.
Wu W, Yan Z, Nguyen TC, Bouman Chen Z, Chien S, Zhong S. Wu W, et al. Among authors: nguyen tc. Nat Protoc. 2019 Nov;14(11):3243-3272. doi: 10.1038/s41596-019-0229-4. Epub 2019 Oct 16. Nat Protoc. 2019. PMID: 31619811 Free PMC article.
468 results