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14 examples of how LLMs can transform materials science and chemistry: a reflection on a large language model hackathon.
Jablonka KM, Ai Q, Al-Feghali A, Badhwar S, Bocarsly JD, Bran AM, Bringuier S, Brinson LC, Choudhary K, Circi D, Cox S, de Jong WA, Evans ML, Gastellu N, Genzling J, Gil MV, Gupta AK, Hong Z, Imran A, Kruschwitz S, Labarre A, Lála J, Liu T, Ma S, Majumdar S, Merz GW, Moitessier N, Moubarak E, Mouriño B, Pelkie B, Pieler M, Ramos MC, Ranković B, Rodriques SG, Sanders JN, Schwaller P, Schwarting M, Shi J, Smit B, Smith BE, Van Herck J, Völker C, Ward L, Warren S, Weiser B, Zhang S, Zhang X, Zia GA, Scourtas A, Schmidt KJ, Foster I, White AD, Blaiszik B. Jablonka KM, et al. Among authors: foster i. Digit Discov. 2023 Aug 8;2(5):1233-1250. doi: 10.1039/d3dd00113j. eCollection 2023 Oct 9. Digit Discov. 2023. PMID: 38013906 Free PMC article. Review.
Lynx web services for annotations and systems analysis of multi-gene disorders.
Sulakhe D, Taylor A, Balasubramanian S, Feng B, Xie B, Börnigen D, Dave UJ, Foster IT, Gilliam TC, Maltsev N. Sulakhe D, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W473-7. doi: 10.1093/nar/gku517. Epub 2014 Jun 19. Nucleic Acids Res. 2014. PMID: 24948611 Free PMC article.
'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine.
Gardeux V, Achour I, Li J, Maienschein-Cline M, Li H, Pesce L, Parinandi G, Bahroos N, Winn R, Foster I, Garcia JG, Lussier YA. Gardeux V, et al. Among authors: foster i. J Am Med Inform Assoc. 2014 Nov-Dec;21(6):1015-25. doi: 10.1136/amiajnl-2013-002519. Epub 2014 Jun 12. J Am Med Inform Assoc. 2014. PMID: 25301808 Free PMC article.
The grid: computing without bounds.
Foster I. Foster I. Sci Am. 2003 Apr;288(4):78-85. doi: 10.1038/scientificamerican0403-78. Sci Am. 2003. PMID: 12661319 No abstract available.
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.
Funk CC, Casella AM, Jung S, Richards MA, Rodriguez A, Shannon P, Donovan-Maiye R, Heavner B, Chard K, Xiao Y, Glusman G, Ertekin-Taner N, Golde TE, Toga A, Hood L, Van Horn JD, Kesselman C, Foster I, Madduri R, Price ND, Ament SA. Funk CC, et al. Among authors: foster i. Cell Rep. 2020 Aug 18;32(7):108029. doi: 10.1016/j.celrep.2020.108029. Cell Rep. 2020. PMID: 32814038 Free PMC article.
Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).
Helmer KG, Ambite JL, Ames J, Ananthakrishnan R, Burns G, Chervenak AL, Foster I, Liming L, Keator D, Macciardi F, Madduri R, Navarro JP, Potkin S, Rosen B, Ruffins S, Schuler R, Turner JA, Toga A, Williams C, Kesselman C; Biomedical Informatics Research Network. Helmer KG, et al. Among authors: foster i. J Am Med Inform Assoc. 2011 Jul-Aug;18(4):416-22. doi: 10.1136/amiajnl-2010-000032. Epub 2011 Apr 22. J Am Med Inform Assoc. 2011. PMID: 21515543 Free PMC article.
A regional nuclear conflict would compromise global food security.
Jägermeyr J, Robock A, Elliott J, Müller C, Xia L, Khabarov N, Folberth C, Schmid E, Liu W, Zabel F, Rabin SS, Puma MJ, Heslin A, Franke J, Foster I, Asseng S, Bardeen CG, Toon OB, Rosenzweig C. Jägermeyr J, et al. Among authors: foster i. Proc Natl Acad Sci U S A. 2020 Mar 31;117(13):7071-7081. doi: 10.1073/pnas.1919049117. Epub 2020 Mar 16. Proc Natl Acad Sci U S A. 2020. PMID: 32179678 Free PMC article.
caGrid 1.0: an enterprise Grid infrastructure for biomedical research.
Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, Foster I, Saltz J. Oster S, et al. Among authors: foster i. J Am Med Inform Assoc. 2008 Mar-Apr;15(2):138-49. doi: 10.1197/jamia.M2522. Epub 2007 Dec 20. J Am Med Inform Assoc. 2008. PMID: 18096909 Free PMC article.
Deep learning at the edge enables real-time streaming ptychographic imaging.
Babu AV, Zhou T, Kandel S, Bicer T, Liu Z, Judge W, Ching DJ, Jiang Y, Veseli S, Henke S, Chard R, Yao Y, Sirazitdinova E, Gupta G, Holt MV, Foster IT, Miceli A, Cherukara MJ. Babu AV, et al. Among authors: foster it. Nat Commun. 2023 Nov 3;14(1):7059. doi: 10.1038/s41467-023-41496-z. Nat Commun. 2023. PMID: 37923741 Free PMC article.
130 results