Marenduzzo D - Search Results

1

Bridging condensins mediate compaction of mitotic chromosomes.

Forte G, Boteva L, Conforto F, Gilbert N, Cook PR, Marenduzzo D. Forte G, et al. Among authors: marenduzzo d. J Cell Biol. 2024 Jan 1;223(1):e202209113. doi: 10.1083/jcb.202209113. Epub 2023 Nov 17. J Cell Biol. 2024. PMID: 37976091 Free PMC article.

2

Entropic organization of interphase chromosomes.

Cook PR, Marenduzzo D. Cook PR, et al. Among authors: marenduzzo d. J Cell Biol. 2009 Sep 21;186(6):825-34. doi: 10.1083/jcb.200903083. Epub 2009 Sep 14. J Cell Biol. 2009. PMID: 19752020 Free PMC article.

3

The depletion attraction: an underappreciated force driving cellular organization.

Marenduzzo D, Finan K, Cook PR. Marenduzzo D, et al. J Cell Biol. 2006 Dec 4;175(5):681-6. doi: 10.1083/jcb.200609066. J Cell Biol. 2006. PMID: 17145959 Free PMC article. Review.

4

Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes.

Finan K, Cook PR, Marenduzzo D. Finan K, et al. Among authors: marenduzzo d. Chromosome Res. 2011 Jan;19(1):53-61. doi: 10.1007/s10577-010-9150-y. Chromosome Res. 2011. PMID: 20714801 Review.

5

A simple model for DNA bridging proteins and bacterial or human genomes: bridging-induced attraction and genome compaction.

Johnson J, Brackley CA, Cook PR, Marenduzzo D. Johnson J, et al. Among authors: marenduzzo d. J Phys Condens Matter. 2015 Feb 18;27(6):064119. doi: 10.1088/0953-8984/27/6/064119. Epub 2015 Jan 7. J Phys Condens Matter. 2015. PMID: 25563801 Free article.

6

Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains.

Brackley CA, Johnson J, Kelly S, Cook PR, Marenduzzo D. Brackley CA, et al. Among authors: marenduzzo d. Nucleic Acids Res. 2016 May 5;44(8):3503-12. doi: 10.1093/nar/gkw135. Epub 2016 Apr 8. Nucleic Acids Res. 2016. PMID: 27060145 Free PMC article.

7

Transcription-driven genome organization: a model for chromosome structure and the regulation of gene expression tested through simulations.

Cook PR, Marenduzzo D. Cook PR, et al. Among authors: marenduzzo d. Nucleic Acids Res. 2018 Nov 2;46(19):9895-9906. doi: 10.1093/nar/gky763. Nucleic Acids Res. 2018. PMID: 30239812 Free PMC article. Review.

8

Predictive Polymer Models for 3D Chromosome Organization.

Chiang M, Forte G, Gilbert N, Marenduzzo D, Brackley CA. Chiang M, et al. Among authors: marenduzzo d. Methods Mol Biol. 2022;2301:267-291. doi: 10.1007/978-1-0716-1390-0_14. Methods Mol Biol. 2022. PMID: 34415541 Review.

9

Transcription modulates chromatin dynamics and locus configuration sampling.

Forte G, Buckle A, Boyle S, Marenduzzo D, Gilbert N, Brackley CA. Forte G, et al. Among authors: marenduzzo d. Nat Struct Mol Biol. 2023 Sep;30(9):1275-1285. doi: 10.1038/s41594-023-01059-8. Epub 2023 Aug 3. Nat Struct Mol Biol. 2023. PMID: 37537334 Free PMC article.

10

Modeling a self-avoiding chromatin loop: relation to the packing problem, action-at-a-distance, and nuclear context.

Bon M, Marenduzzo D, Cook PR. Bon M, et al. Among authors: marenduzzo d. Structure. 2006 Feb;14(2):197-204. doi: 10.1016/j.str.2005.10.016. Structure. 2006. PMID: 16472739 Free article.

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