Stoddard BL - Search Results

1

The structural basis of mRNA recognition and binding by yeast pseudouridine synthase PUS1.

Grünberg S, Doyle LA, Wolf EJ, Dai N, Corrêa IR Jr, Yigit E, Stoddard BL. Grünberg S, et al. Among authors: stoddard bl. PLoS One. 2023 Nov 8;18(11):e0291267. doi: 10.1371/journal.pone.0291267. eCollection 2023. PLoS One. 2023. PMID: 37939088 Free PMC article.

2

De novo computational design of retro-aldol enzymes.

Jiang L, Althoff EA, Clemente FR, Doyle L, Röthlisberger D, Zanghellini A, Gallaher JL, Betker JL, Tanaka F, Barbas CF 3rd, Hilvert D, Houk KN, Stoddard BL, Baker D. Jiang L, et al. Among authors: stoddard bl. Science. 2008 Mar 7;319(5868):1387-91. doi: 10.1126/science.1152692. Science. 2008. PMID: 18323453 Free PMC article.

3

High-resolution profiling of homing endonuclease binding and catalytic specificity using yeast surface display.

Jarjour J, West-Foyle H, Certo MT, Hubert CG, Doyle L, Getz MM, Stoddard BL, Scharenberg AM. Jarjour J, et al. Among authors: stoddard bl. Nucleic Acids Res. 2009 Nov;37(20):6871-80. doi: 10.1093/nar/gkp726. Epub 2009 Sep 8. Nucleic Acids Res. 2009. PMID: 19740766 Free PMC article.

4

Computational design of ligand-binding proteins with high affinity and selectivity.

Tinberg CE, Khare SD, Dou J, Doyle L, Nelson JW, Schena A, Jankowski W, Kalodimos CG, Johnsson K, Stoddard BL, Baker D. Tinberg CE, et al. Among authors: stoddard bl. Nature. 2013 Sep 12;501(7466):212-216. doi: 10.1038/nature12443. Epub 2013 Sep 4. Nature. 2013. PMID: 24005320 Free PMC article.

5

A synthetic sex ratio distortion system for the control of the human malaria mosquito.

Galizi R, Doyle LA, Menichelli M, Bernardini F, Deredec A, Burt A, Stoddard BL, Windbichler N, Crisanti A. Galizi R, et al. Among authors: stoddard bl. Nat Commun. 2014 Jun 10;5:3977. doi: 10.1038/ncomms4977. Nat Commun. 2014. PMID: 24915045 Free PMC article.

6

Precise assembly of complex beta sheet topologies from de novo designed building blocks.

King IC, Gleixner J, Doyle L, Kuzin A, Hunt JF, Xiao R, Montelione GT, Stoddard BL, DiMaio F, Baker D. King IC, et al. Among authors: stoddard bl. Elife. 2015 Dec 9;4:e11012. doi: 10.7554/eLife.11012. Elife. 2015. PMID: 26650357 Free PMC article.

7

Rational design of α-helical tandem repeat proteins with closed architectures.

Doyle L, Hallinan J, Bolduc J, Parmeggiani F, Baker D, Stoddard BL, Bradley P. Doyle L, et al. Among authors: stoddard bl. Nature. 2015 Dec 24;528(7583):585-8. doi: 10.1038/nature16191. Epub 2015 Dec 16. Nature. 2015. PMID: 26675735 Free PMC article.

8

The effect of increasing numbers of repeats on TAL effector DNA binding specificity.

Rinaldi FC, Doyle LA, Stoddard BL, Bogdanove AJ. Rinaldi FC, et al. Among authors: stoddard bl. Nucleic Acids Res. 2017 Jun 20;45(11):6960-6970. doi: 10.1093/nar/gkx342. Nucleic Acids Res. 2017. PMID: 28460076 Free PMC article.

9

Sampling and energy evaluation challenges in ligand binding protein design.

Dou J, Doyle L, Jr Greisen P, Schena A, Park H, Johnsson K, Stoddard BL, Baker D. Dou J, et al. Among authors: stoddard bl. Protein Sci. 2017 Dec;26(12):2426-2437. doi: 10.1002/pro.3317. Epub 2017 Oct 30. Protein Sci. 2017. PMID: 28980354 Free PMC article.

10

De novo design of a fluorescence-activating β-barrel.

Dou J, Vorobieva AA, Sheffler W, Doyle LA, Park H, Bick MJ, Mao B, Foight GW, Lee MY, Gagnon LA, Carter L, Sankaran B, Ovchinnikov S, Marcos E, Huang PS, Vaughan JC, Stoddard BL, Baker D. Dou J, et al. Among authors: stoddard bl. Nature. 2018 Sep;561(7724):485-491. doi: 10.1038/s41586-018-0509-0. Epub 2018 Sep 12. Nature. 2018. PMID: 30209393 Free PMC article.

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