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Mutational spectra are associated with bacterial niche.
Ruis C, Weimann A, Tonkin-Hill G, Pandurangan AP, Matuszewska M, Murray GGR, Lévesque RC, Blundell TL, Floto RA, Parkhill J. Ruis C, et al. Among authors: parkhill j. Nat Commun. 2023 Nov 4;14(1):7091. doi: 10.1038/s41467-023-42916-w. Nat Commun. 2023. PMID: 37925514 Free PMC article.
Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study.
Bryant JM, Grogono DM, Greaves D, Foweraker J, Roddick I, Inns T, Reacher M, Haworth CS, Curran MD, Harris SR, Peacock SJ, Parkhill J, Floto RA. Bryant JM, et al. Among authors: parkhill j. Lancet. 2013 May 4;381(9877):1551-60. doi: 10.1016/S0140-6736(13)60632-7. Epub 2013 Mar 29. Lancet. 2013. PMID: 23541540 Free PMC article.
Genomic epidemiology of a national outbreak of post-surgical Mycobacterium abscessus wound infections in Brazil.
Everall I, Nogueira CL, Bryant JM, Sánchez-Busó L, Chimara E, Duarte RDS, Ramos JP, Lima KVB, Lopes ML, Palaci M, Kipnis A, Monego F, Floto RA, Parkhill J, Leão SC, Harris SR. Everall I, et al. Among authors: parkhill j. Microb Genom. 2017 May 3;3(5):e000111. doi: 10.1099/mgen.0.000111. eCollection 2017 May. Microb Genom. 2017. PMID: 28884021 Free PMC article.
Arginine-deprivation-induced oxidative damage sterilizes Mycobacterium tuberculosis.
Tiwari S, van Tonder AJ, Vilchèze C, Mendes V, Thomas SE, Malek A, Chen B, Chen M, Kim J, Blundell TL, Parkhill J, Weinrick B, Berney M, Jacobs WR Jr. Tiwari S, et al. Among authors: parkhill j. Proc Natl Acad Sci U S A. 2018 Sep 25;115(39):9779-9784. doi: 10.1073/pnas.1808874115. Epub 2018 Aug 24. Proc Natl Acad Sci U S A. 2018. PMID: 30143580 Free PMC article.
Mutations in the MAB_2299c TetR Regulator Confer Cross-Resistance to Clofazimine and Bedaquiline in Mycobacterium abscessus.
Richard M, Gutiérrez AV, Viljoen A, Rodriguez-Rincon D, Roquet-Baneres F, Blaise M, Everall I, Parkhill J, Floto RA, Kremer L. Richard M, et al. Among authors: parkhill j. Antimicrob Agents Chemother. 2018 Dec 21;63(1):e01316-18. doi: 10.1128/AAC.01316-18. Print 2019 Jan. Antimicrob Agents Chemother. 2018. PMID: 30323043 Free PMC article.
Identification and Characterization of Genetic Determinants of Isoniazid and Rifampicin Resistance in Mycobacterium tuberculosis in Southern India.
Munir A, Kumar N, Ramalingam SB, Tamilzhalagan S, Shanmugam SK, Palaniappan AN, Nair D, Priyadarshini P, Natarajan M, Tripathy S, Ranganathan UD, Peacock SJ, Parkhill J, Blundell TL, Malhotra S. Munir A, et al. Among authors: parkhill j. Sci Rep. 2019 Jul 16;9(1):10283. doi: 10.1038/s41598-019-46756-x. Sci Rep. 2019. PMID: 31311987 Free PMC article.
Genome-wide epistasis and co-selection study using mutual information.
Pensar J, Puranen S, Arnold B, MacAlasdair N, Kuronen J, Tonkin-Hill G, Pesonen M, Xu Y, Sipola A, Sánchez-Busó L, Lees JA, Chewapreecha C, Bentley SD, Harris SR, Parkhill J, Croucher NJ, Corander J. Pensar J, et al. Among authors: parkhill j. Nucleic Acids Res. 2019 Oct 10;47(18):e112. doi: 10.1093/nar/gkz656. Nucleic Acids Res. 2019. PMID: 31361894 Free PMC article.
745 results