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Single-cell gene set scoring with nearest neighbor graph smoothed data (gssnng).
Bioinform Adv. 2023 Oct 18;3(1):vbad150. doi: 10.1093/bioadv/vbad150. eCollection 2023.
Bioinform Adv. 2023.
PMID: 37886712
Free PMC article.
Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis.
Strasser MK, Gibbs DL, Gascard P, Bons J, Hickey JW, Schürch CM, Tan Y, Black S, Chu P, Ozkan A, Basisty N, Sangwan V, Rose J, Shah S, Camilleri-Broet S, Fiset PO, Bertos N, Berube J, Djambazian H, Li R, Oikonomopoulos S, Fels-Elliott DR, Vernovsky S, Shimshoni E, Collyar D, Russell A, Ragoussis I, Stachler M, Goldenring JR, McDonald S, Ingber DE, Schilling B, Nolan GP, Tlsty TD, Huang S, Ferri LE.
Strasser MK, et al.
bioRxiv [Preprint]. 2023 Jun 11:2023.06.08.544265. doi: 10.1101/2023.06.08.544265.
bioRxiv. 2023.
PMID: 37333362
Free PMC article.
Preprint.
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Cancer cell population growth kinetics at low densities deviate from the exponential growth model and suggest an Allee effect.
Johnson KE, Howard G, Mo W, Strasser MK, Lima EABF, Huang S, Brock A.
Johnson KE, et al. Among authors: strasser mk.
PLoS Biol. 2019 Aug 5;17(8):e3000399. doi: 10.1371/journal.pbio.3000399. eCollection 2019 Aug.
PLoS Biol. 2019.
PMID: 31381560
Free PMC article.
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Increasing Neural Stem Cell Division Asymmetry and Quiescence Are Predicted to Contribute to the Age-Related Decline in Neurogenesis.
Bast L, Calzolari F, Strasser MK, Hasenauer J, Theis FJ, Ninkovic J, Marr C.
Bast L, et al. Among authors: strasser mk.
Cell Rep. 2018 Dec 18;25(12):3231-3240.e8. doi: 10.1016/j.celrep.2018.11.088.
Cell Rep. 2018.
PMID: 30566852
Free article.
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Lineage marker synchrony in hematopoietic genealogies refutes the PU.1/GATA1 toggle switch paradigm.
Strasser MK, Hoppe PS, Loeffler D, Kokkaliaris KD, Schroeder T, Theis FJ, Marr C.
Strasser MK, et al.
Nat Commun. 2018 Jul 12;9(1):2697. doi: 10.1038/s41467-018-05037-3.
Nat Commun. 2018.
PMID: 30002371
Free PMC article.
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cgCorrect: a method to correct for confounding cell-cell variation due to cell growth in single-cell transcriptomics.
Blasi T, Buettner F, Strasser MK, Marr C, Theis FJ.
Blasi T, et al. Among authors: strasser mk.
Phys Biol. 2017 May 11;14(3):036001. doi: 10.1088/1478-3975/aa609a.
Phys Biol. 2017.
PMID: 28198357
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Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios.
Hoppe PS, Schwarzfischer M, Loeffler D, Kokkaliaris KD, Hilsenbeck O, Moritz N, Endele M, Filipczyk A, Gambardella A, Ahmed N, Etzrodt M, Coutu DL, Rieger MA, Marr C, Strasser MK, Schauberger B, Burtscher I, Ermakova O, Bürger A, Lickert H, Nerlov C, Theis FJ, Schroeder T.
Hoppe PS, et al. Among authors: strasser mk.
Nature. 2016 Jul 14;535(7611):299-302. doi: 10.1038/nature18320.
Nature. 2016.
PMID: 27411635
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Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy.
Strasser MK, Feigelman J, Theis FJ, Marr C.
Strasser MK, et al.
BMC Syst Biol. 2015 Sep 21;9:61. doi: 10.1186/s12918-015-0208-5.
BMC Syst Biol. 2015.
PMID: 26391569
Free PMC article.
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