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Page 1
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H. Hensen N, et al. Among authors: barry k. Mol Phylogenet Evol. 2023 Dec;189:107938. doi: 10.1016/j.ympev.2023.107938. Epub 2023 Oct 10. Mol Phylogenet Evol. 2023. PMID: 37820761 Free article.
Comparative genomics of xylose-fermenting fungi for enhanced biofuel production.
Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, Labutti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, Dale BE, Jeffries TW, Zinkel R, Barry KW, Grigoriev IV, Gasch AP. Wohlbach DJ, et al. Among authors: barry kw. Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13212-7. doi: 10.1073/pnas.1103039108. Epub 2011 Jul 25. Proc Natl Acad Sci U S A. 2011. PMID: 21788494 Free PMC article.
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV. Ohm RA, et al. Among authors: barry kw. PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037. Epub 2012 Dec 6. PLoS Pathog. 2012. PMID: 23236275 Free PMC article.
Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens.
Condon BJ, Leng Y, Wu D, Bushley KE, Ohm RA, Otillar R, Martin J, Schackwitz W, Grimwood J, MohdZainudin N, Xue C, Wang R, Manning VA, Dhillon B, Tu ZJ, Steffenson BJ, Salamov A, Sun H, Lowry S, LaButti K, Han J, Copeland A, Lindquist E, Barry K, Schmutz J, Baker SE, Ciuffetti LM, Grigoriev IV, Zhong S, Turgeon BG. Condon BJ, et al. Among authors: barry k. PLoS Genet. 2013;9(1):e1003233. doi: 10.1371/journal.pgen.1003233. Epub 2013 Jan 24. PLoS Genet. 2013. PMID: 23357949 Free PMC article.
Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.
Toome M, Kuo A, Henrissat B, Lipzen A, Tritt A, Yoshinaga Y, Zane M, Barry K, Grigoriev IV, Spatafora JW, Aime MC. Toome M, et al. Among authors: barry k. Genome Announc. 2014 Jun 12;2(3):e00539-14. doi: 10.1128/genomeA.00539-14. Genome Announc. 2014. PMID: 24926052 Free PMC article.
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species.
Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, Zalar P, Grube M, Sun H, Han J, Sharma A, Chiniquy J, Ngan CY, Lipzen A, Barry K, Grigoriev IV, Gunde-Cimerman N. Gostinčar C, et al. Among authors: barry k. BMC Genomics. 2014 Jul 1;15:549. doi: 10.1186/1471-2164-15-549. BMC Genomics. 2014. PMID: 24984952 Free PMC article.
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Högberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A; Mycorrhizal Genomics Initiative Consortium; Tunlid A, Grigoriev IV, Hibbett DS, Martin F. Kohler A, et al. Among authors: barry kw. Nat Genet. 2015 Apr;47(4):410-5. doi: 10.1038/ng.3223. Epub 2015 Feb 23. Nat Genet. 2015. PMID: 25706625 Free article.
Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea.
Muraguchi H, Umezawa K, Niikura M, Yoshida M, Kozaki T, Ishii K, Sakai K, Shimizu M, Nakahori K, Sakamoto Y, Choi C, Ngan CY, Lindquist E, Lipzen A, Tritt A, Haridas S, Barry K, Grigoriev IV, Pukkila PJ. Muraguchi H, et al. Among authors: barry k. PLoS One. 2015 Oct 28;10(10):e0141586. doi: 10.1371/journal.pone.0141586. eCollection 2015. PLoS One. 2015. PMID: 26510163 Free PMC article.
906 results