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Proteome-wide base editor screens to assess phosphorylation site functionality in high-throughput.
Kennedy PH, Deh Sheikh AA, Balakar M, Jones AC, Olive ME, Hegde M, Matias MI, Pirete N, Burt R, Levy J, Little T, Hogan PG, Liu DR, Doench JG, Newton AC, Gottschalk RA, de Boer C, Alarcón S, Newby G, Myers SA. Kennedy PH, et al. Among authors: doench jg. bioRxiv [Preprint]. 2023 Nov 14:2023.11.11.566649. doi: 10.1101/2023.11.11.566649. bioRxiv. 2023. PMID: 38014346 Free PMC article. Updated. Preprint.
Targetable leukemia dependency on noncanonical PI3Kγ signaling.
Luo Q, Raulston EG, Prado MA, Wu X, Gritsman K, Yan K, Booth CAG, Xu R, van Galen P, Doench JG, Shimony S, Long HW, Neuberg DS, Paulo JA, Lane AA. Luo Q, et al. Among authors: doench jg. bioRxiv [Preprint]. 2023 Dec 15:2023.12.15.571909. doi: 10.1101/2023.12.15.571909. bioRxiv. 2023. PMID: 38328043 Free PMC article. Updated. Preprint.
Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq.
Geiger-Schuller K, Eraslan B, Kuksenko O, Dey KK, Jagadeesh KA, Thakore PI, Karayel O, Yung AR, Rajagopalan A, Meireles AM, Yang KD, Amir-Zilberstein L, Delorey T, Phillips D, Raychowdhury R, Moussion C, Price AL, Hacohen N, Doench JG, Uhler C, Rozenblatt-Rosen O, Regev A. Geiger-Schuller K, et al. Among authors: doench jg. bioRxiv [Preprint]. 2023 Jan 24:2023.01.23.525198. doi: 10.1101/2023.01.23.525198. bioRxiv. 2023. PMID: 36747789 Free PMC article. Preprint.
Mammalian SWI/SNF complex activity regulates POU2F3 and constitutes a targetable dependency in small cell lung cancer.
Duplaquet L, So K, Ying AW, Li X, Li Y, Qiu X, Li R, Singh S, Wu XS, Liu Q, Qi J, Somerville TDD, Heiling H, Mazzola E, Lee Y, Zoller T, Vakoc CR, Doench JG, Forrester WC, Abrams T, Long HW, Niederst MJ, Kadoch C, Oser MG. Duplaquet L, et al. Among authors: doench jg. bioRxiv [Preprint]. 2024 Jan 24:2024.01.21.576304. doi: 10.1101/2024.01.21.576304. bioRxiv. 2024. PMID: 38328215 Free PMC article. Preprint.
Targetable leukaemia dependency on noncanonical PI3Kγ signalling.
Luo Q, Raulston EG, Prado MA, Wu X, Gritsman K, Whalen KS, Yan K, Booth CAG, Xu R, van Galen P, Doench JG, Shimony S, Long HW, Neuberg DS, Paulo JA, Lane AA. Luo Q, et al. Among authors: doench jg. Nature. 2024 May 8. doi: 10.1038/s41586-024-07410-3. Online ahead of print. Nature. 2024. PMID: 38720074
Post-translational modification-centric base editor screens to assess phosphorylation site functionality in high throughput.
Kennedy PH, Alborzian Deh Sheikh A, Balakar M, Jones AC, Olive ME, Hegde M, Matias MI, Pirete N, Burt R, Levy J, Little T, Hogan PG, Liu DR, Doench JG, Newton AC, Gottschalk RA, de Boer CG, Alarcón S, Newby GA, Myers SA. Kennedy PH, et al. Among authors: doench jg. Nat Methods. 2024 Apr 29. doi: 10.1038/s41592-024-02256-z. Online ahead of print. Nat Methods. 2024. PMID: 38684783
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations.
Chandrasekaran SN, Cimini BA, Goodale A, Miller L, Kost-Alimova M, Jamali N, Doench JG, Fritchman B, Skepner A, Melanson M, Kalinin AA, Arevalo J, Haghighi M, Caicedo JC, Kuhn D, Hernandez D, Berstler J, Shafqat-Abbasi H, Root DE, Swalley SE, Garg S, Singh S, Carpenter AE. Chandrasekaran SN, et al. Among authors: doench jg. Nat Methods. 2024 Apr 9. doi: 10.1038/s41592-024-02241-6. Online ahead of print. Nat Methods. 2024. PMID: 38594452
152 results