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Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus.
Pomraning KR, Dai Z, Munoz N, Kim YM, Gao Y, Deng S, Kim J, Hofstad BA, Swita MS, Lemmon T, Collett JR, Panisko EA, Webb-Robertson BM, Zucker JD, Nicora CD, De Paoli H, Baker SE, Burnum-Johnson KE, Hillson NJ, Magnuson JK. Pomraning KR, et al. Among authors: kim ym, kim j. Front Bioeng Biotechnol. 2021 Apr 7;9:603832. doi: 10.3389/fbioe.2021.603832. eCollection 2021. Front Bioeng Biotechnol. 2021. PMID: 33898398 Free PMC article.
Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus.
Pomraning KR, Dai Z, Munoz N, Kim YM, Gao Y, Deng S, Lemmon T, Swita MS, Zucker JD, Kim J, Mondo SJ, Panisko E, Burnet MC, Webb-Robertson BM, Hofstad B, Baker SE, Burnum-Johnson KE, Magnuson JK; Agile BioFoundry. Pomraning KR, et al. Among authors: kim ym, kim j. Metab Eng Commun. 2022 Aug 24;15:e00203. doi: 10.1016/j.mec.2022.e00203. eCollection 2022 Dec. Metab Eng Commun. 2022. PMID: 36065328 Free PMC article.
Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species.
Dai Z, Pomraning KR, Deng S, Kim J, Campbell KB, Robles AL, Hofstad BA, Munoz N, Gao Y, Lemmon T, Swita MS, Zucker JD, Kim YM, Burnum-Johnson KE, Magnuson JK. Dai Z, et al. Among authors: kim ym, kim j. Biotechnol Biofuels Bioprod. 2023 Mar 29;16(1):53. doi: 10.1186/s13068-023-02288-1. Biotechnol Biofuels Bioprod. 2023. PMID: 36991437 Free PMC article.
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.
Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, Fasani RA, Tsalenko A, Tanjore D, Gardner J, Smith RD, Michener JK, Gladden JM, Baker ES, Petzold CJ, Kim YM, Apffel A, Magnuson JK, Burnum-Johnson KE. Bilbao A, et al. Among authors: kim ym, kim j. Nat Commun. 2023 Apr 28;14(1):2461. doi: 10.1038/s41467-023-37031-9. Nat Commun. 2023. PMID: 37117207 Free PMC article.
Engineering Rhodosporidium toruloides for production of 3-hydroxypropionic acid from lignocellulosic hydrolysate.
Liu D, Hwang HJ, Otoupal PB, Geiselman GM, Kim J, Pomraning KR, Kim YM, Munoz N, Nicora CD, Gao Y, Burnum-Johnson KE, Jacobson O, Coradetti S, Kim J, Deng S, Dai Z, Prahl JP, Tanjore D, Lee TS, Magnuson JK, Gladden JM. Liu D, et al. Among authors: kim ym, kim j. Metab Eng. 2023 Jul;78:72-83. doi: 10.1016/j.ymben.2023.05.001. Epub 2023 May 16. Metab Eng. 2023. PMID: 37201565
Rapid and robust squashed spore/colony PCR of industrially important fungi.
Yuan G, Czajka JJ, Dai Z, Hu D, Pomraning KR, Hofstad BA, Kim J, Robles AL, Deng S, Magnuson JK. Yuan G, et al. Among authors: kim j. Fungal Biol Biotechnol. 2023 Jul 8;10(1):15. doi: 10.1186/s40694-023-00163-0. Fungal Biol Biotechnol. 2023. PMID: 37422681 Free PMC article.
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