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Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains.
Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. Zwick RK, et al. Among authors: mcginnis cs. bioRxiv [Preprint]. 2023 Sep 22:2023.09.20.558726. doi: 10.1101/2023.09.20.558726. bioRxiv. 2023. PMID: 37790430 Free PMC article. Updated. Preprint.
D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response.
Jiang J, Chen S, Tsou T, McGinnis CS, Khazaei T, Zhu Q, Park JH, Strazhnik IM, Hanna J, Chow ED, Sivak DA, Gartner ZJ, Thomson M. Jiang J, et al. Among authors: mcginnis cs. bioRxiv [Preprint]. 2023 May 20:2023.04.19.537364. doi: 10.1101/2023.04.19.537364. bioRxiv. 2023. PMID: 37131803 Free PMC article. Preprint.
Patterning and folding of intestinal villi by active mesenchymal dewetting.
Huycke TR, Miyazaki H, Häkkinen TJ, Srivastava V, Barruet E, McGinnis CS, Kalantari A, Cornwall-Scoones J, Vaka D, Zhu Q, Jo H, DeGrado WF, Thomson M, Garikipati K, Boffelli D, Klein OD, Gartner ZJ. Huycke TR, et al. Among authors: mcginnis cs. bioRxiv [Preprint]. 2023 Aug 15:2023.06.25.546328. doi: 10.1101/2023.06.25.546328. bioRxiv. 2023. PMID: 37425793 Free PMC article. Preprint.
Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains.
Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. Zwick RK, et al. Among authors: mcginnis cs. Nat Cell Biol. 2024 Feb;26(2):250-262. doi: 10.1038/s41556-023-01337-z. Epub 2024 Feb 6. Nat Cell Biol. 2024. PMID: 38321203
ZipSeq: barcoding for real-time mapping of single cell transcriptomes.
Hu KH, Eichorst JP, McGinnis CS, Patterson DM, Chow ED, Kersten K, Jameson SC, Gartner ZJ, Rao AA, Krummel MF. Hu KH, et al. Among authors: mcginnis cs. Nat Methods. 2020 Aug;17(8):833-843. doi: 10.1038/s41592-020-0880-2. Epub 2020 Jul 6. Nat Methods. 2020. PMID: 32632238 Free PMC article.
Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids.
Popova G, Soliman SS, Kim CN, Keefe MG, Hennick KM, Jain S, Li T, Tejera D, Shin D, Chhun BB, McGinnis CS, Speir M, Gartner ZJ, Mehta SB, Haeussler M, Hengen KB, Ransohoff RR, Piao X, Nowakowski TJ. Popova G, et al. Among authors: mcginnis cs. Cell Stem Cell. 2021 Dec 2;28(12):2153-2166.e6. doi: 10.1016/j.stem.2021.08.015. Epub 2021 Sep 17. Cell Stem Cell. 2021. PMID: 34536354 Free PMC article.
Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia.
Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE Jr, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS. Su-Feher L, et al. Among authors: mcginnis cs. Proc Natl Acad Sci U S A. 2022 Apr 12;119(15):e2108760119. doi: 10.1073/pnas.2108760119. Epub 2022 Apr 4. Proc Natl Acad Sci U S A. 2022. PMID: 35377797 Free PMC article.
16 results