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Current Progress and Challenges in Large-Scale 3D Mitochondria Instance Segmentation.
Franco-Barranco D, Lin Z, Jang WD, Wang X, Shen Q, Yin W, Fan Y, Li M, Chen C, Xiong Z, Xin R, Liu H, Chen H, Li Z, Zhao J, Chen X, Pape C, Conrad R, Nightingale L, de Folter J, Jones ML, Liu Y, Ziaei D, Huschauer S, Arganda-Carreras I, Pfister H, Wei D. Franco-Barranco D, et al. Among authors: arganda carreras i. IEEE Trans Med Imaging. 2023 Dec;42(12):3956-3971. doi: 10.1109/TMI.2023.3320497. Epub 2023 Nov 30. IEEE Trans Med Imaging. 2023. PMID: 37768797 Free PMC article.
3D Domain Adaptive Instance Segmentation via Cyclic Segmentation GANs.
Lauenburg L, Lin Z, Zhang R, Santos MD, Huang S, Arganda-Carreras I, Boyden ES, Pfister H, Wei D. Lauenburg L, et al. Among authors: arganda carreras i. IEEE J Biomed Health Inform. 2023 Aug;27(8):4018-4027. doi: 10.1109/JBHI.2023.3281332. Epub 2023 Aug 7. IEEE J Biomed Health Inform. 2023. PMID: 37252868 Free PMC article.
DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible.
Hidalgo-Cenalmor I, Pylvänäinen JW, G Ferreira M, Russell CT, Saguy A, Arganda-Carreras I, Shechtman Y; AI4Life Horizon Europe Program Consortium; Jacquemet G, Henriques R, Gómez-de-Mariscal E. Hidalgo-Cenalmor I, et al. Among authors: arganda carreras i. Nat Methods. 2024 May 17. doi: 10.1038/s41592-024-02295-6. Online ahead of print. Nat Methods. 2024. PMID: 38760611 No abstract available.
CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia.
Andrés-San Román JA, Gordillo-Vázquez C, Franco-Barranco D, Morato L, Fernández-Espartero CH, Baonza G, Tagua A, Vicente-Munuera P, Palacios AM, Gavilán MP, Martín-Belmonte F, Annese V, Gómez-Gálvez P, Arganda-Carreras I, Escudero LM. Andrés-San Román JA, et al. Among authors: arganda carreras i. Cell Rep Methods. 2023 Oct 23;3(10):100597. doi: 10.1016/j.crmeth.2023.100597. Epub 2023 Sep 25. Cell Rep Methods. 2023. PMID: 37751739 Free PMC article.
A quantitative biophysical principle to explain the 3D cellular connectivity in curved epithelia.
Gómez-Gálvez P, Vicente-Munuera P, Anbari S, Tagua A, Gordillo-Vázquez C, Andrés-San Román JA, Franco-Barranco D, Palacios AM, Velasco A, Capitán-Agudo C, Grima C, Annese V, Arganda-Carreras I, Robles R, Márquez A, Buceta J, Escudero LM. Gómez-Gálvez P, et al. Among authors: arganda carreras i. Cell Syst. 2022 Aug 17;13(8):631-643.e8. doi: 10.1016/j.cels.2022.06.003. Epub 2022 Jul 13. Cell Syst. 2022. PMID: 35835108 Free article.
Deep learning based domain adaptation for mitochondria segmentation on EM volumes.
Franco-Barranco D, Pastor-Tronch J, González-Marfil A, Muñoz-Barrutia A, Arganda-Carreras I. Franco-Barranco D, et al. Among authors: arganda carreras i. Comput Methods Programs Biomed. 2022 Jul;222:106949. doi: 10.1016/j.cmpb.2022.106949. Epub 2022 Jun 14. Comput Methods Programs Biomed. 2022. PMID: 35753105 Free article.
Brain virtual histology with X-ray phase-contrast tomography Part II:3D morphologies of amyloid-β plaques in Alzheimer's disease models.
Chourrout M, Roux M, Boisvert C, Gislard C, Legland D, Arganda-Carreras I, Olivier C, Peyrin F, Boutin H, Rama N, Baron T, Meyronet D, Brun E, Rositi H, Wiart M, Chauveau F. Chourrout M, et al. Among authors: arganda carreras i. Biomed Opt Express. 2022 Feb 23;13(3):1640-1653. doi: 10.1364/BOE.438890. eCollection 2022 Mar 1. Biomed Opt Express. 2022. PMID: 35414980 Free PMC article.
39 results