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Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding.
Xiong W, van Workum DM, Berke L, Bakker LV, Schijlen E, Becker FFM, van de Geest H, Peters S, Michelmore R, van Treuren R, Jeuken M, Smit S, Schranz ME. Xiong W, et al. Among authors: berke l. G3 (Bethesda). 2023 Nov 1;13(11):jkad204. doi: 10.1093/g3journal/jkad204. G3 (Bethesda). 2023. PMID: 37740775 Free PMC article.
PanTools v3: functional annotation, classification and phylogenomics.
Jonkheer EM, van Workum DM, Sheikhizadeh Anari S, Brankovics B, de Haan JR, Berke L, van der Lee TAJ, de Ridder D, Smit S. Jonkheer EM, et al. Among authors: berke l. Bioinformatics. 2022 Sep 15;38(18):4403-4405. doi: 10.1093/bioinformatics/btac506. Bioinformatics. 2022. PMID: 35861394 Free PMC article.
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool.
Jonkheer EM, Brankovics B, Houwers IM, van der Wolf JM, Bonants PJM, Vreeburg RAM, Bollema R, de Haan JR, Berke L, Smit S, de Ridder D, van der Lee TAJ. Jonkheer EM, et al. Among authors: berke l. BMC Genomics. 2021 Apr 14;22(1):265. doi: 10.1186/s12864-021-07583-5. BMC Genomics. 2021. PMID: 33849459 Free PMC article.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Santuari L, Sanchez-Perez GF, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novak O, Ljung K, van Heesch S, de Bruijn E, Cuppen E, Willemsen V, Mähönen AP, Lukowitz W, Snel B, de Ridder D, Scheres B, Heidstra R. Santuari L, et al. Among authors: berke l. Plant Cell. 2016 Dec;28(12):2937-2951. doi: 10.1105/tpc.16.00656. Epub 2016 Dec 5. Plant Cell. 2016. PMID: 27920338 Free PMC article.
Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome sequences from dandelion (Taraxacum officinale).
Xiong W, Risse J, Berke L, Zhao T, van de Geest H, Oplaat C, Busscher M, Ferreira de Carvalho J, van der Meer IM, Verhoeven KJF, Schranz ME, Vijverberg K. Xiong W, et al. Among authors: berke l. Front Plant Sci. 2023 Jun 21;14:1198909. doi: 10.3389/fpls.2023.1198909. eCollection 2023. Front Plant Sci. 2023. PMID: 37457342 Free PMC article.
21 results