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TranSyT, an innovative framework for identifying transport systems.
Bioinformatics. 2023 Aug 1;39(8):btad466. doi: 10.1093/bioinformatics/btad466.
Bioinformatics. 2023.
PMID: 37589572
Free PMC article.
SamPler - a novel method for selecting parameters for gene functional annotation routines.
Cruz F, Lagoa D, Mendes J, Rocha I, Ferreira EC, Rocha M, Dias O.
Cruz F, et al. Among authors: lagoa d.
BMC Bioinformatics. 2019 Sep 5;20(1):454. doi: 10.1186/s12859-019-3038-4.
BMC Bioinformatics. 2019.
PMID: 31488049
Free PMC article.
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merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models.
Capela J, Lagoa D, Rodrigues R, Cunha E, Cruz F, Barbosa A, Bastos J, Lima D, Ferreira EC, Rocha M, Dias O.
Capela J, et al. Among authors: lagoa d.
Nucleic Acids Res. 2022 Jun 24;50(11):6052-6066. doi: 10.1093/nar/gkac459.
Nucleic Acids Res. 2022.
PMID: 35694833
Free PMC article.
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Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction.
Viana R, Dias O, Lagoa D, Galocha M, Rocha I, Teixeira MC.
Viana R, et al. Among authors: lagoa d.
J Fungi (Basel). 2020 Sep 11;6(3):171. doi: 10.3390/jof6030171.
J Fungi (Basel). 2020.
PMID: 32932905
Free PMC article.
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The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber.
Cunha E, Silva M, Chaves I, Demirci H, Lagoa DR, Lima D, Rocha M, Rocha I, Dias O.
Cunha E, et al. Among authors: lagoa dr.
PLoS Comput Biol. 2023 Sep 20;19(9):e1011499. doi: 10.1371/journal.pcbi.1011499. eCollection 2023 Sep.
PLoS Comput Biol. 2023.
PMID: 37729340
Free PMC article.
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