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Predictive signature of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer integrating mRNA expression, taxonomic subtypes, and clinicopathological features.
Font A, Domenech M, Ramirez JL, Marqués M, Benítez R, Ruiz de Porras V, Gago JL, Carrato C, Sant F, Lopez H, Castellano D, Malats N, Calle ML, Real FX. Font A, et al. Among authors: calle ml. Front Oncol. 2023 Aug 3;13:1155244. doi: 10.3389/fonc.2023.1155244. eCollection 2023. Front Oncol. 2023. PMID: 37588099 Free PMC article.
Compositional structural brain signatures capture Alzheimer's genetic risk on brain structure along the disease continuum.
Genius P, Calle ML, Rodríguez-Fernández B, Minguillon C, Cacciaglia R, Garrido-Martin D, Esteller M, Navarro A, Gispert JD, Vilor-Tejedor N; Alzheimer’s Disease Neuroimaging Initiative; ALFA study. Genius P, et al. Among authors: calle ml. medRxiv [Preprint]. 2024 May 8:2024.05.08.24307046. doi: 10.1101/2024.05.08.24307046. medRxiv. 2024. PMID: 38766190 Free PMC article. Preprint.
Microbiome compositional data analysis for survival studies.
Pujolassos M, Susín A, Calle ML. Pujolassos M, et al. Among authors: calle ml. NAR Genom Bioinform. 2024 Apr 25;6(2):lqae038. doi: 10.1093/nargab/lqae038. eCollection 2024 Jun. NAR Genom Bioinform. 2024. PMID: 38666212 Free PMC article.
A toolbox of machine learning software to support microbiome analysis.
Marcos-Zambrano LJ, López-Molina VM, Bakir-Gungor B, Frohme M, Karaduzovic-Hadziabdic K, Klammsteiner T, Ibrahimi E, Lahti L, Loncar-Turukalo T, Dhamo X, Simeon A, Nechyporenko A, Pio G, Przymus P, Sampri A, Trajkovik V, Lacruz-Pleguezuelos B, Aasmets O, Araujo R, Anagnostopoulos I, Aydemir Ö, Berland M, Calle ML, Ceci M, Duman H, Gündoğdu A, Havulinna AS, Kaka Bra KHN, Kalluci E, Karav S, Lode D, Lopes MB, May P, Nap B, Nedyalkova M, Paciência I, Pasic L, Pujolassos M, Shigdel R, Susín A, Thiele I, Truică CO, Wilmes P, Yilmaz E, Yousef M, Claesson MJ, Truu J, Carrillo de Santa Pau E. Marcos-Zambrano LJ, et al. Among authors: calle ml. Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023. Front Microbiol. 2023. PMID: 38075858 Free PMC article. Review.
Epigenetic landscape in the kick-and-kill therapeutic vaccine BCN02 clinical trial is associated with antiretroviral treatment interruption (ATI) outcome.
Oriol-Tordera B, Esteve-Codina A, Berdasco M, Rosás-Umbert M, Gonçalves E, Duran-Castells C, Català-Moll F, Llano A, Cedeño S, Puertas MC, Tolstrup M, Søgaard OS, Clotet B, Martínez-Picado J, Hanke T, Combadiere B, Paredes R, Hartigan-O'Connor D, Esteller M, Meulbroek M, Calle ML, Sanchez-Pla A, Moltó J, Mothe B, Brander C, Ruiz-Riol M. Oriol-Tordera B, et al. Among authors: calle ml. EBioMedicine. 2022 Apr;78:103956. doi: 10.1016/j.ebiom.2022.103956. Epub 2022 Mar 21. EBioMedicine. 2022. PMID: 35325780 Free PMC article.
Obesity status and obesity-associated gut dysbiosis effects on hypothalamic structural covariance.
Contreras-Rodriguez O, Arnoriaga-Rodríguez M, Miranda-Olivos R, Blasco G, Biarnés C, Puig J, Rivera-Pinto J, Calle ML, Pérez-Brocal V, Moya A, Coll C, Ramió-Torrentà L, Soriano-Mas C, Fernandez-Real JM. Contreras-Rodriguez O, et al. Among authors: calle ml. Int J Obes (Lond). 2022 Jan;46(1):30-38. doi: 10.1038/s41366-021-00953-9. Epub 2021 Sep 1. Int J Obes (Lond). 2022. PMID: 34471225 Free PMC article.
Variable selection in microbiome compositional data analysis.
Susin A, Wang Y, Lê Cao KA, Calle ML. Susin A, et al. Among authors: calle ml. NAR Genom Bioinform. 2020 May 13;2(2):lqaa029. doi: 10.1093/nargab/lqaa029. eCollection 2020 Jun. NAR Genom Bioinform. 2020. PMID: 33575585 Free PMC article.
TL1A-DR3 Plasma Levels Are Predictive of HIV-1 Disease Control, and DR3 Costimulation Boosts HIV-1-Specific T Cell Responses.
Oriol-Tordera B, Olvera A, Duran-Castells C, Llano A, Mothe B, Massanella M, Dalmau J, Ganoza C, Sanchez J, Calle ML, Clotet B, Martinez-Picado J, Negredo E, Blanco J, Hartigan-O'Connor D, Brander C, Ruiz-Riol M. Oriol-Tordera B, et al. Among authors: calle ml. J Immunol. 2020 Dec 15;205(12):3348-3357. doi: 10.4049/jimmunol.2000933. Epub 2020 Nov 11. J Immunol. 2020. PMID: 33177161 Free PMC article.
39 results