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Bayesian reconstruction of SARS-CoV-2 transmissions highlights substantial proportion of negative serial intervals.
Geismar C, Nguyen V, Fragaszy E, Shrotri M, Navaratnam AMD, Beale S, Byrne TE, Fong WLE, Yavlinsky A, Kovar J, Hoskins S, Braithwaite I, Aldridge RW, Hayward AC, White PJ, Jombart T, Cori A. Geismar C, et al. Among authors: jombart t. Epidemics. 2023 Sep;44:100713. doi: 10.1016/j.epidem.2023.100713. Epub 2023 Aug 7. Epidemics. 2023. PMID: 37579586 Free article.
An Aboriginal Australian genome reveals separate human dispersals into Asia.
Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega FM, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MT, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijff P, Migliano AB, Gallego Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Wang J, Willerslev E. Rasmussen M, et al. Among authors: jombart t. Science. 2011 Oct 7;334(6052):94-8. doi: 10.1126/science.1211177. Epub 2011 Sep 22. Science. 2011. PMID: 21940856 Free PMC article.
Plasmodium falciparum accompanied the human expansion out of Africa.
Tanabe K, Mita T, Jombart T, Eriksson A, Horibe S, Palacpac N, Ranford-Cartwright L, Sawai H, Sakihama N, Ohmae H, Nakamura M, Ferreira MU, Escalante AA, Prugnolle F, Björkman A, Färnert A, Kaneko A, Horii T, Manica A, Kishino H, Balloux F. Tanabe K, et al. Among authors: jombart t. Curr Biol. 2010 Jul 27;20(14):1283-9. doi: 10.1016/j.cub.2010.05.053. Epub 2010 Jun 17. Curr Biol. 2010. PMID: 20656209 Free article.
Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.
Cui Y, Yu C, Yan Y, Li D, Li Y, Jombart T, Weinert LA, Wang Z, Guo Z, Xu L, Zhang Y, Zheng H, Qin N, Xiao X, Wu M, Wang X, Zhou D, Qi Z, Du Z, Wu H, Yang X, Cao H, Wang H, Wang J, Yao S, Rakin A, Li Y, Falush D, Balloux F, Achtman M, Song Y, Wang J, Yang R. Cui Y, et al. Among authors: jombart t. Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):577-82. doi: 10.1073/pnas.1205750110. Epub 2012 Dec 27. Proc Natl Acad Sci U S A. 2013. PMID: 23271803 Free PMC article.
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.
Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, Rahalison L, Petersen JM, Balloux F, Keim P, Wirth T, Ravel J, Yang R, Carniel E, Achtman M. Morelli G, et al. Among authors: jombart t. Nat Genet. 2010 Dec;42(12):1140-3. doi: 10.1038/ng.705. Epub 2010 Oct 31. Nat Genet. 2010. PMID: 21037571 Free PMC article.
131 results