Speed TP - Search Results

1

sccomp: Robust differential composition and variability analysis for single-cell data.

Mangiola S, Roth-Schulze AJ, Trussart M, Zozaya-Valdés E, Ma M, Gao Z, Rubin AF, Speed TP, Shim H, Papenfuss AT. Mangiola S, et al. Among authors: speed tp. Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2203828120. doi: 10.1073/pnas.2203828120. Epub 2023 Aug 7. Proc Natl Acad Sci U S A. 2023. PMID: 37549298 Free PMC article.

2

Regulation of apicomplexan actin-based motility.

Baum J, Papenfuss AT, Baum B, Speed TP, Cowman AF. Baum J, et al. Among authors: speed tp. Nat Rev Microbiol. 2006 Aug;4(8):621-8. doi: 10.1038/nrmicro1465. Nat Rev Microbiol. 2006. PMID: 16845432 Review.

3

Evolution and comparative analysis of the MHC Class III inflammatory region.

Deakin JE, Papenfuss AT, Belov K, Cross JG, Coggill P, Palmer S, Sims S, Speed TP, Beck S, Graves JA. Deakin JE, et al. Among authors: speed tp. BMC Genomics. 2006 Nov 2;7:281. doi: 10.1186/1471-2164-7-281. BMC Genomics. 2006. PMID: 17081307 Free PMC article.

4

Analysis of the platypus genome suggests a transposon origin for mammalian imprinting.

Pask AJ, Papenfuss AT, Ager EI, McColl KA, Speed TP, Renfree MB. Pask AJ, et al. Among authors: speed tp. Genome Biol. 2009;10(1):R1. doi: 10.1186/gb-2009-10-1-r1. Epub 2009 Jan 2. Genome Biol. 2009. PMID: 19121219 Free PMC article.

5

A recombination hotspot leads to sequence variability within a novel gene (AK005651) and contributes to type 1 diabetes susceptibility.

Tan IK, Mackin L, Wang N, Papenfuss AT, Elso CM, Ashton MP, Quirk F, Phipson B, Bahlo M, Speed TP, Smyth GK, Morahan G, Brodnicki TC. Tan IK, et al. Among authors: speed tp. Genome Res. 2010 Dec;20(12):1629-38. doi: 10.1101/gr.101881.109. Epub 2010 Nov 4. Genome Res. 2010. PMID: 21051460 Free PMC article.

6

A statistical framework for analyzing deep mutational scanning data.

Rubin AF, Gelman H, Lucas N, Bajjalieh SM, Papenfuss AT, Speed TP, Fowler DM. Rubin AF, et al. Among authors: speed tp. Genome Biol. 2017 Aug 7;18(1):150. doi: 10.1186/s13059-017-1272-5. Genome Biol. 2017. PMID: 28784151 Free PMC article.

7

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly.

Cameron DL, Schröder J, Penington JS, Do H, Molania R, Dobrovic A, Speed TP, Papenfuss AT. Cameron DL, et al. Among authors: speed tp. Genome Res. 2017 Dec;27(12):2050-2060. doi: 10.1101/gr.222109.117. Epub 2017 Nov 2. Genome Res. 2017. PMID: 29097403 Free PMC article.

8

Correction to: A statistical framework for analyzing deep mutational scanning data.

Rubin AF, Gelman H, Lucas N, Bajjalieh SM, Papenfuss AT, Speed TP, Fowler DM. Rubin AF, et al. Among authors: speed tp. Genome Biol. 2018 Feb 7;19(1):17. doi: 10.1186/s13059-018-1391-7. Genome Biol. 2018. PMID: 29415752 Free PMC article.

9

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets.

Lin Y, Ghazanfar S, Wang KYX, Gagnon-Bartsch JA, Lo KK, Su X, Han ZG, Ormerod JT, Speed TP, Yang P, Yang JYH. Lin Y, et al. Among authors: speed tp. Proc Natl Acad Sci U S A. 2019 May 14;116(20):9775-9784. doi: 10.1073/pnas.1820006116. Epub 2019 Apr 26. Proc Natl Acad Sci U S A. 2019. PMID: 31028141 Free PMC article.

10

Removing unwanted variation with CytofRUV to integrate multiple CyTOF datasets.

Trussart M, Teh CE, Tan T, Leong L, Gray DH, Speed TP. Trussart M, et al. Among authors: speed tp. Elife. 2020 Sep 7;9:e59630. doi: 10.7554/eLife.59630. Elife. 2020. PMID: 32894218 Free PMC article.

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