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Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
Dillon MR, Bolyen E, Adamov A, Belk A, Borsom E, Burcham Z, Debelius JW, Deel H, Emmons A, Estaki M, Herman C, Keefe CR, Morton JT, Oliveira RRM, Sanchez A, Simard A, Vázquez-Baeza Y, Ziemski M, Miwa HE, Kerere TA, Coote C, Bonneau R, Knight R, Oliveira G, Gopalasingam P, Kaehler BD, Cope EK, Metcalf JL, Robeson Ii MS, Bokulich NA, Caporaso JG. Dillon MR, et al. Among authors: herman c. PLoS Comput Biol. 2021 Jun 24;17(6):e1009056. doi: 10.1371/journal.pcbi.1009056. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34166363 Free PMC article.
Predicting Neurodegenerative Disease Using Prepathology Gut Microbiota Composition: a Longitudinal Study in Mice Modeling Alzheimer's Disease Pathologies.
Borsom EM, Conn K, Keefe CR, Herman C, Orsini GM, Hirsch AH, Palma Avila M, Testo G, Jaramillo SA, Bolyen E, Lee K, Caporaso JG, Cope EK. Borsom EM, et al. Among authors: herman c. Microbiol Spectr. 2023 Mar 6;11(2):e0345822. doi: 10.1128/spectrum.03458-22. Online ahead of print. Microbiol Spectr. 2023. PMID: 36877047 Free PMC article.
Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay.
Keefe CR, Dillon MR, Gehret E, Herman C, Jewell M, Wood CV, Bolyen E, Caporaso JG. Keefe CR, et al. Among authors: herman c. PLoS Comput Biol. 2023 Nov 27;19(11):e1011676. doi: 10.1371/journal.pcbi.1011676. eCollection 2023 Nov. PLoS Comput Biol. 2023. PMID: 38011287 Free PMC article.
Cohort-based learning for microbiome research community standards.
Kelliher JM, Rudolph M, Vangay P, Abbas A, Borton MA, Davenport ER, Davenport KW, Erazo NG, Herman C, Karstens L, Kocurek B, Lutz HL, Myers KS, Ockert I, Rodriguez FE, Santistevan C, Saunders JK, Smith ML, Vogtmann E, Windsor A, Wood-Charlson EM, Woodley L, Eloe-Fadrosh EA. Kelliher JM, et al. Among authors: herman c. Nat Microbiol. 2023 May;8(5):751-753. doi: 10.1038/s41564-023-01361-7. Nat Microbiol. 2023. PMID: 37069400 No abstract available.
Clinical Presentation and Management of the Cervical Aortic Arch in the Adult Population: A Review of Case Reports.
Baudo M, Sicouri S, Yamashita Y, Senzai M, Herman CR, Rodriguez R, Patel S, Ahmal B, Lo Rito M, Meisner R, Hirsch L, Uribe A, Ramlawi B. Baudo M, et al. Among authors: herman cr. J Cardiothorac Vasc Anesth. 2024 Apr 2:S1053-0770(24)00233-7. doi: 10.1053/j.jvca.2024.03.041. Online ahead of print. J Cardiothorac Vasc Anesth. 2024. PMID: 38834445 Review.
Assessing Engraftment Following Fecal Microbiota Transplant.
Herman C, Barker BM, Bartelli TF, Chandra V, Krajmalnik-Brown R, Jewell M, Li L, Liao C, McAllister F, Nirmalkar K, Xavier JB, Gregory Caporaso J. Herman C, et al. ArXiv [Preprint]. 2024 Apr 10:arXiv:2404.07325v1. ArXiv. 2024. PMID: 38659636 Free PMC article. Preprint.
758 results