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Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.
O'Donnell S, Yue JX, Saada OA, Agier N, Caradec C, Cokelaer T, De Chiara M, Delmas S, Dutreux F, Fournier T, Friedrich A, Kornobis E, Li J, Miao Z, Tattini L, Schacherer J, Liti G, Fischer G. O'Donnell S, et al. Among authors: li j. Nat Genet. 2023 Aug;55(8):1390-1399. doi: 10.1038/s41588-023-01459-y. Epub 2023 Jul 31. Nat Genet. 2023. PMID: 37524789 Free PMC article.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G. Yue JX, et al. Among authors: li j. Nat Genet. 2017 Jun;49(6):913-924. doi: 10.1038/ng.3847. Epub 2017 Apr 17. Nat Genet. 2017. PMID: 28416820 Free PMC article.
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.
Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z. Giordano F, et al. Among authors: li j. Sci Rep. 2017 Jun 21;7(1):3935. doi: 10.1038/s41598-017-03996-z. Sci Rep. 2017. PMID: 28638050 Free PMC article.
Clonal Heterogeneity Influences the Fate of New Adaptive Mutations.
Vázquez-García I, Salinas F, Li J, Fischer A, Barré B, Hallin J, Bergström A, Alonso-Perez E, Warringer J, Mustonen V, Liti G. Vázquez-García I, et al. Among authors: li j. Cell Rep. 2017 Oct 17;21(3):732-744. doi: 10.1016/j.celrep.2017.09.046. Cell Rep. 2017. PMID: 29045840 Free PMC article.
Human RAP1 specifically protects telomeres of senescent cells from DNA damage.
Lototska L, Yue JX, Li J, Giraud-Panis MJ, Songyang Z, Royle NJ, Liti G, Ye J, Gilson E, Mendez-Bermudez A. Lototska L, et al. Among authors: li j. EMBO Rep. 2020 Apr 3;21(4):e49076. doi: 10.15252/embr.201949076. Epub 2020 Feb 25. EMBO Rep. 2020. PMID: 32096305 Free PMC article.
Differential Gene Expression and Allele Frequency Changes Favour Adaptation of a Heterogeneous Yeast Population to Nitrogen-Limited Fermentations.
Kessi-Pérez EI, Ponce B, Li J, Molinet J, Baeza C, Figueroa D, Bastías C, Gaete M, Liti G, Díaz-Barrera A, Salinas F, Martínez C. Kessi-Pérez EI, et al. Among authors: li j. Front Microbiol. 2020 Jun 15;11:1204. doi: 10.3389/fmicb.2020.01204. eCollection 2020. Front Microbiol. 2020. PMID: 32612585 Free PMC article.
Genetically controlled mtDNA deletions prevent ROS damage by arresting oxidative phosphorylation.
Stenberg S, Li J, Gjuvsland AB, Persson K, Demitz-Helin E, González Peña C, Yue JX, Gilchrist C, Ärengård T, Ghiaci P, Larsson-Berglund L, Zackrisson M, Smits S, Hallin J, Höög JL, Molin M, Liti G, Omholt SW, Warringer J. Stenberg S, et al. Among authors: li j. Elife. 2022 Jul 8;11:e76095. doi: 10.7554/eLife.76095. Elife. 2022. PMID: 35801695 Free PMC article.
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