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Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Moroz OV, Blagova E, Lebedev AA, Skov LK, Pache RA, Schnorr KM, Kiemer L, Friis EP, Nymand-Grarup S, Ming L, Ye L, Klausen M, Cohn MT, Schmidt EGW, Davies GJ, Wilson KS. Moroz OV, et al. Among authors: lebedev aa. Acta Crystallogr D Struct Biol. 2023 Aug 1;79(Pt 8):706-720. doi: 10.1107/S2059798323005004. Epub 2023 Jul 10. Acta Crystallogr D Struct Biol. 2023. PMID: 37428847 Free PMC article.
Efficient anisotropic refinement of macromolecular structures using FFT.
Murshudov GN, Vagin AA, Lebedev A, Wilson KS, Dodson EJ. Murshudov GN, et al. Among authors: lebedev a. Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):247-55. doi: 10.1107/S090744499801405X. Epub 1999 Jan 1. Acta Crystallogr D Biol Crystallogr. 1999. PMID: 10089417
JLigand: a graphical tool for the CCP4 template-restraint library.
Lebedev AA, Young P, Isupov MN, Moroz OV, Vagin AA, Murshudov GN. Lebedev AA, et al. Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):431-40. doi: 10.1107/S090744491200251X. Epub 2012 Mar 17. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 22505263 Free PMC article.
CCP4i2: the new graphical user interface to the CCP4 program suite.
Potterton L, Agirre J, Ballard C, Cowtan K, Dodson E, Evans PR, Jenkins HT, Keegan R, Krissinel E, Stevenson K, Lebedev A, McNicholas SJ, Nicholls RA, Noble M, Pannu NS, Roth C, Sheldrick G, Skubak P, Turkenburg J, Uski V, von Delft F, Waterman D, Wilson K, Winn M, Wojdyr M. Potterton L, et al. Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):68-84. doi: 10.1107/S2059798317016035. Epub 2018 Feb 1. Acta Crystallogr D Struct Biol. 2018. PMID: 29533233 Free PMC article.
Multitasking in the gut: the X-ray structure of the multidomain BbgIII from Bifidobacterium bifidum offers possible explanations for its alternative functions.
Moroz OV, Blagova E, Lebedev AA, Sánchez Rodríguez F, Rigden DJ, Tams JW, Wilting R, Vester JK, Longhin E, Hansen GH, Krogh KBRM, Pache RA, Davies GJ, Wilson KS. Moroz OV, et al. Among authors: lebedev aa. Acta Crystallogr D Struct Biol. 2021 Dec 1;77(Pt 12):1564-1578. doi: 10.1107/S2059798321010949. Epub 2021 Nov 17. Acta Crystallogr D Struct Biol. 2021. PMID: 34866612
The CCP4 suite: integrative software for macromolecular crystallography.
Agirre J, Atanasova M, Bagdonas H, Ballard CB, Baslé A, Beilsten-Edmands J, Borges RJ, Brown DG, Burgos-Mármol JJ, Berrisford JM, Bond PS, Caballero I, Catapano L, Chojnowski G, Cook AG, Cowtan KD, Croll TI, Debreczeni JÉ, Devenish NE, Dodson EJ, Drevon TR, Emsley P, Evans G, Evans PR, Fando M, Foadi J, Fuentes-Montero L, Garman EF, Gerstel M, Gildea RJ, Hatti K, Hekkelman ML, Heuser P, Hoh SW, Hough MA, Jenkins HT, Jiménez E, Joosten RP, Keegan RM, Keep N, Krissinel EB, Kolenko P, Kovalevskiy O, Lamzin VS, Lawson DM, Lebedev AA, Leslie AGW, Lohkamp B, Long F, Malý M, McCoy AJ, McNicholas SJ, Medina A, Millán C, Murray JW, Murshudov GN, Nicholls RA, Noble MEM, Oeffner R, Pannu NS, Parkhurst JM, Pearce N, Pereira J, Perrakis A, Powell HR, Read RJ, Rigden DJ, Rochira W, Sammito M, Sánchez Rodríguez F, Sheldrick GM, Shelley KL, Simkovic F, Simpkin AJ, Skubak P, Sobolev E, Steiner RA, Stevenson K, Tews I, Thomas JMH, Thorn A, Valls JT, Uski V, Usón I, Vagin A, Velankar S, Vollmar M, Walden H, Waterman D, Wilson KS, Winn MD, Winter G, Wojdyr M, Yamashita K. Agirre J, et al. Among authors: lebedev aa. Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461. doi: 10.1107/S2059798323003595. Epub 2023 May 30. Acta Crystallogr D Struct Biol. 2023. PMID: 37259835 Free PMC article.
Predicted models and CCP4.
Simpkin AJ, Caballero I, McNicholas S, Stevenson K, Jiménez E, Sánchez Rodríguez F, Fando M, Uski V, Ballard C, Chojnowski G, Lebedev A, Krissinel E, Usón I, Rigden DJ, Keegan RM. Simpkin AJ, et al. Acta Crystallogr D Struct Biol. 2023 Sep 1;79(Pt 9):806-819. doi: 10.1107/S2059798323006289. Epub 2023 Aug 17. Acta Crystallogr D Struct Biol. 2023. PMID: 37594303 Free PMC article.
258 results