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Mapping synapses by conjugate light-electron array tomography.
Collman F, Buchanan J, Phend KD, Micheva KD, Weinberg RJ, Smith SJ. Collman F, et al. J Neurosci. 2015 Apr 8;35(14):5792-807. doi: 10.1523/JNEUROSCI.4274-14.2015. J Neurosci. 2015. PMID: 25855189 Free PMC article.
Knowing a synapse when you see one.
Burette A, Collman F, Micheva KD, Smith SJ, Weinberg RJ. Burette A, et al. Among authors: collman f. Front Neuroanat. 2015 Jul 28;9:100. doi: 10.3389/fnana.2015.00100. eCollection 2015. Front Neuroanat. 2015. PMID: 26283929 Free PMC article.
Probabilistic fluorescence-based synapse detection.
Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G. Simhal AK, et al. Among authors: collman f. PLoS Comput Biol. 2017 Apr 17;13(4):e1005493. doi: 10.1371/journal.pcbi.1005493. eCollection 2017 Apr. PLoS Comput Biol. 2017. PMID: 28414801 Free PMC article.
A community-developed open-source computational ecosystem for big neuro data.
Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. Vogelstein JT, et al. Among authors: collman f. Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. Nat Methods. 2018. PMID: 30377345 Free PMC article. No abstract available.
Single-cell transcriptomic evidence for dense intracortical neuropeptide networks.
Smith SJ, Sümbül U, Graybuck LT, Collman F, Seshamani S, Gala R, Gliko O, Elabbady L, Miller JA, Bakken TE, Rossier J, Yao Z, Lein E, Zeng H, Tasic B, Hawrylycz M. Smith SJ, et al. Among authors: collman f. Elife. 2019 Nov 11;8:e47889. doi: 10.7554/eLife.47889. Elife. 2019. PMID: 31710287 Free PMC article.
Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex.
Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G, Seshamani S, Suckow S, Takeno M, Torres R, Yin W, Dorkenwald S, Bae JA, Castro MA, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Silversmith W, Turner NL, Wong W, Wu J; MICrONS Consortium; Reimer J, Tolias AS, Seung HS, Reid RC, Collman F, Maçarico da Costa N. Schneider-Mizell CM, et al. Among authors: collman f. bioRxiv [Preprint]. 2024 Jan 6:2023.01.23.525290. doi: 10.1101/2023.01.23.525290. bioRxiv. 2024. PMID: 36747710 Free PMC article. Preprint.
Functional connectomics reveals general wiring rule in mouse visual cortex.
Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Kunin AB, Chang A, Fu J, Ding Z, Patel S, Ponder K, Muhammad T, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Froudarakis E, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Walker EY, Pitkow X, Reimer J, Tolias AS. Ding Z, et al. Among authors: collman f. bioRxiv [Preprint]. 2023 Mar 30:2023.03.13.531369. doi: 10.1101/2023.03.13.531369. bioRxiv. 2023. PMID: 36993398 Free PMC article. Preprint.
33 results