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Deep Phenotyping of the Lipidomic Response in COVID and non-COVID Sepsis.
Meng H, Sengupta A, Ricciotti E, Mrčela A, Mathew D, Mazaleuskaya LL, Ghosh S, Brooks TG, Turner AP, Schanoski AS, Lahens NF, Tan AW, Woolfork A, Grant G, Susztak K, Letizia AG, Sealfon SC, Wherry EJ, Laudanski K, Weljie AM, Meyer NB, FitzGerald GA. Meng H, et al. Among authors: brooks tg. bioRxiv [Preprint]. 2023 Jun 2:2023.06.02.543298. doi: 10.1101/2023.06.02.543298. bioRxiv. 2023. PMID: 37398323 Free PMC article. Updated. Preprint.
Accounting for Time: Circadian Rhythms in the Time of COVID-19.
Sengupta S, Brooks TG, Grant GR, FitzGerald GA. Sengupta S, et al. Among authors: brooks tg. J Biol Rhythms. 2021 Feb;36(1):4-8. doi: 10.1177/0748730420953335. Epub 2020 Sep 2. J Biol Rhythms. 2021. PMID: 32875944 Free PMC article. Review.
Comparative evaluation of full-length isoform quantification from RNA-Seq.
Sarantopoulou D, Brooks TG, Nayak S, Mrčela A, Lahens NF, Grant GR. Sarantopoulou D, et al. Among authors: brooks tg. BMC Bioinformatics. 2021 May 25;22(1):266. doi: 10.1186/s12859-021-04198-1. BMC Bioinformatics. 2021. PMID: 34034652 Free PMC article. Review.
Nitecap: An Exploratory Circadian Analysis Web Application.
Brooks TG, Mrčela A, Lahens NF, Paschos GK, Grosser T, Skarke C, FitzGerald GA, Grant GR. Brooks TG, et al. J Biol Rhythms. 2022 Feb;37(1):43-52. doi: 10.1177/07487304211054408. Epub 2021 Nov 2. J Biol Rhythms. 2022. PMID: 34724846 Free PMC article.
BEERS2: RNA-Seq simulation through high fidelity in silico modeling.
Brooks TG, Lahens NF, Mrčela A, Sarantopoulou D, Nayak S, Naik A, Sengupta S, Choi PS, Grant GR. Brooks TG, et al. bioRxiv [Preprint]. 2023 Apr 24:2023.04.21.537847. doi: 10.1101/2023.04.21.537847. bioRxiv. 2023. PMID: 37162982 Free PMC article. Updated. Preprint.
Sexual dimorphism in the response to chronic circadian misalignment on a high-fat diet.
Anderson ST, Meng H, Brooks TG, Tang SY, Lordan R, Sengupta A, Nayak S, Mřela A, Sarantopoulou D, Lahens NF, Weljie A, Grant GR, Bushman FD, FitzGerald GA. Anderson ST, et al. Among authors: brooks tg. Sci Transl Med. 2023 May 17;15(696):eabo2022. doi: 10.1126/scitranslmed.abo2022. Epub 2023 May 17. Sci Transl Med. 2023. PMID: 37196066
Deep phenotyping of the lipidomic response in COVID-19 and non-COVID-19 sepsis.
Meng H, Sengupta A, Ricciotti E, Mrčela A, Mathew D, Mazaleuskaya LL, Ghosh S, Brooks TG, Turner AP, Schanoski AS, Lahens NF, Tan AW, Woolfork A, Grant G, Susztak K, Letizia AG, Sealfon SC, Wherry EJ, Laudanski K, Weljie AM, Meyer NJ, FitzGerald GA. Meng H, et al. Among authors: brooks tg. Clin Transl Med. 2023 Nov;13(11):e1440. doi: 10.1002/ctm2.1440. Clin Transl Med. 2023. PMID: 37948331 Free PMC article.
Challenges and best practices in omics benchmarking.
Brooks TG, Lahens NF, Mrčela A, Grant GR. Brooks TG, et al. Nat Rev Genet. 2024 May;25(5):326-339. doi: 10.1038/s41576-023-00679-6. Epub 2024 Jan 12. Nat Rev Genet. 2024. PMID: 38216661 Review.
20 results