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Comprehensive proteogenomic characterization of rare kidney tumors.
Li GX, Chen L, Hsiao Y, Mannan R, Zhang Y, Luo J, Petralia F, Cho H, Hosseini N, Leprevost FDV, Calinawan A, Li Y, Anand S, Dagar A, Geffen Y, Kumar-Sinha C, Chugh S, Le A, Ponce S, Guo S, Zhang C, Schnaubelt M, Al Deen NN, Chen F, Caravan W, Houston A, Hopkins A, Newton CJ, Wang X, Polasky DA, Haynes S, Yu F, Jing X, Chen S, Robles AI, Mesri M, Thiagarajan M, An E, Getz GA, Linehan WM, Hostetter G, Jewell SD, Chan DW, Wang P, Omenn GS, Mehra R, Ricketts CJ, Ding L, Chinnaiyan AM, Cieslik MP, Dhanasekaran SM, Zhang H, Nesvizhskii AI; Clinical Proteomic Tumor Analysis Consortium. Li GX, et al. Among authors: polasky da. Cell Rep Med. 2024 May 21;5(5):101547. doi: 10.1016/j.xcrm.2024.101547. Epub 2024 May 3. Cell Rep Med. 2024. PMID: 38703764 Free article.
Efficient Analysis of Proteome-Wide FPOP Data by FragPipe.
Rojas Ramírez C, Espino JA, Jones LM, Polasky DA, Nesvizhskii AI. Rojas Ramírez C, et al. Among authors: polasky da. Anal Chem. 2023 Nov 7;95(44):16131-16137. doi: 10.1021/acs.analchem.3c02388. Epub 2023 Oct 25. Anal Chem. 2023. PMID: 37878603
Efficient Analysis of Proteome-wide FPOP Data by FragPipe.
Ramírez CR, Espino JA, Jones LM, Polasky DA, Nesvizhskii AI. Ramírez CR, et al. Among authors: polasky da. bioRxiv [Preprint]. 2023 Jun 5:2023.06.01.543263. doi: 10.1101/2023.06.01.543263. bioRxiv. 2023. PMID: 37333157 Free PMC article. Updated. Preprint.
Unraveling the glycosylated immunopeptidome with HLA-Glyco.
Bedran G, Polasky DA, Hsiao Y, Yu F, da Veiga Leprevost F, Alfaro JA, Cieslik M, Nesvizhskii AI. Bedran G, et al. Among authors: polasky da. Nat Commun. 2023 Jun 12;14(1):3461. doi: 10.1038/s41467-023-39270-2. Nat Commun. 2023. PMID: 37308510 Free PMC article.
26 results