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Distant sequence regions of JBP1 contribute to J-DNA binding.
de Vries I, Ammerlaan D, Heidebrecht T, Celie PH, Geerke DP, Joosten RP, Perrakis A. de Vries I, et al. Among authors: perrakis a. Life Sci Alliance. 2023 Jun 16;6(9):e202302150. doi: 10.26508/lsa.202302150. Print 2023 Sep. Life Sci Alliance. 2023. PMID: 37328191 Free PMC article.
UV-induced ligand exchange in MHC class I protein crystals.
Celie PH, Toebes M, Rodenko B, Ovaa H, Perrakis A, Schumacher TN. Celie PH, et al. Among authors: perrakis a. J Am Chem Soc. 2009 Sep 2;131(34):12298-304. doi: 10.1021/ja9037559. J Am Chem Soc. 2009. PMID: 19655750 Free article.
Structure of the FoxM1 DNA-recognition domain bound to a promoter sequence.
Littler DR, Alvarez-Fernández M, Stein A, Hibbert RG, Heidebrecht T, Aloy P, Medema RH, Perrakis A. Littler DR, et al. Among authors: perrakis a. Nucleic Acids Res. 2010 Jul;38(13):4527-38. doi: 10.1093/nar/gkq194. Epub 2010 Mar 31. Nucleic Acids Res. 2010. PMID: 20360045 Free PMC article.
Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.
Joosten RP, Joosten K, Cohen SX, Vriend G, Perrakis A. Joosten RP, et al. Among authors: perrakis a. Bioinformatics. 2011 Dec 15;27(24):3392-8. doi: 10.1093/bioinformatics/btr590. Epub 2011 Oct 27. Bioinformatics. 2011. PMID: 22034521 Free PMC article.
MOTIVATION: Macromolecular crystal structures in the Protein Data Bank (PDB) are a key source of structural insight into biological processes. These structures, some >30 years old, were constructed with methods of their era. ...CONTACT: r.joosten@nki.nl; a.per …
MOTIVATION: Macromolecular crystal structures in the Protein Data Bank (PDB) are a key source of structural insight into biological p …
PDB_REDO: constructive validation, more than just looking for errors.
Joosten RP, Joosten K, Murshudov GN, Perrakis A. Joosten RP, et al. Among authors: perrakis a. Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):484-96. doi: 10.1107/S0907444911054515. Epub 2012 Mar 16. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 22505269 Free PMC article.
244 results