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Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Astashyn A, Tvedte ES, Sweeney D, Sapojnikov V, Bouk N, Joukov V, Mozes E, Strope PK, Sylla PM, Wagner L, Bidwell SL, Clark K, Davis EW, Smith-White B, Hlavina W, Pruitt KD, Schneider VA, Murphy TD. Astashyn A, et al. Among authors: joukov v. bioRxiv [Preprint]. 2023 Jun 6:2023.06.02.543519. doi: 10.1101/2023.06.02.543519. bioRxiv. 2023. PMID: 37292984 Free PMC article. Updated. Preprint.
Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV).
Rangwala SH, Kuznetsov A, Ananiev V, Asztalos A, Borodin E, Evgeniev V, Joukov V, Lotov V, Pannu R, Rudnev D, Shkeda A, Weitz EM, Schneider VA. Rangwala SH, et al. Among authors: joukov v. Genome Res. 2021 Jan;31(1):159-169. doi: 10.1101/gr.266932.120. Epub 2020 Nov 25. Genome Res. 2021. PMID: 33239395 Free PMC article.
ElasticBLAST: Accelerating Sequence Search via Cloud Computing.
Camacho C, Boratyn GM, Joukov V, Alvarez RV, Madden TL. Camacho C, et al. Among authors: joukov v. bioRxiv [Preprint]. 2023 Jan 4:2023.01.04.522777. doi: 10.1101/2023.01.04.522777. bioRxiv. 2023. PMID: 36789435 Free PMC article. Updated. Preprint.
Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Astashyn A, Tvedte ES, Sweeney D, Sapojnikov V, Bouk N, Joukov V, Mozes E, Strope PK, Sylla PM, Wagner L, Bidwell SL, Brown LC, Clark K, Davis EW, Smith-White B, Hlavina W, Pruitt KD, Schneider VA, Murphy TD. Astashyn A, et al. Among authors: joukov v. Genome Biol. 2024 Feb 26;25(1):60. doi: 10.1186/s13059-024-03198-7. Genome Biol. 2024. PMID: 38409096 Free PMC article.
ElasticBLAST: accelerating sequence search via cloud computing.
Camacho C, Boratyn GM, Joukov V, Vera Alvarez R, Madden TL. Camacho C, et al. Among authors: joukov v. BMC Bioinformatics. 2023 Mar 26;24(1):117. doi: 10.1186/s12859-023-05245-9. BMC Bioinformatics. 2023. PMID: 36967390 Free PMC article.
Redox priming promotes Aurora A activation during mitosis.
Lim DC, Joukov V, Rettenmaier TJ, Kumagai A, Dunphy WG, Wells JA, Yaffe MB. Lim DC, et al. Among authors: joukov v. Sci Signal. 2020 Jul 21;13(641):eabb6707. doi: 10.1126/scisignal.abb6707. Sci Signal. 2020. PMID: 32694171 Free PMC article.
48 results