Keskin DB - Search Results

1

Protocol for Classification Single-Cell PBMC Types from Pathological Samples Using Supervised Machine Learning.

Lyu M, Xin L, Jin H, Chitkushev LT, Zhang G, Keskin DB, Brusic V. Lyu M, et al. Among authors: keskin db. Methods Mol Biol. 2023;2673:53-67. doi: 10.1007/978-1-0716-3239-0_4. Methods Mol Biol. 2023. PMID: 37258906

2

Diverse patterns of T-cell response against multiple newly identified human Y chromosome-encoded minor histocompatibility epitopes.

Ofran Y, Kim HT, Brusic V, Blake L, Mandrell M, Wu CJ, Sarantopoulos S, Bellucci R, Keskin DB, Soiffer RJ, Antin JH, Ritz J. Ofran Y, et al. Among authors: keskin db. Clin Cancer Res. 2010 Mar 1;16(5):1642-51. doi: 10.1158/1078-0432.CCR-09-2701. Epub 2010 Feb 16. Clin Cancer Res. 2010. PMID: 20160060 Free PMC article.

3

A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers.

Riemer AB, Keskin DB, Zhang G, Handley M, Anderson KS, Brusic V, Reinhold B, Reinherz EL. Riemer AB, et al. Among authors: keskin db. J Biol Chem. 2010 Sep 17;285(38):29608-22. doi: 10.1074/jbc.M110.126722. Epub 2010 Jul 8. J Biol Chem. 2010. PMID: 20615877 Free PMC article.

4

MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles.

Zhang GL, DeLuca DS, Keskin DB, Chitkushev L, Zlateva T, Lund O, Reinherz EL, Brusic V. Zhang GL, et al. Among authors: keskin db. J Immunol Methods. 2011 Nov 30;374(1-2):53-61. doi: 10.1016/j.jim.2010.11.009. Epub 2010 Dec 2. J Immunol Methods. 2011. PMID: 21130094 Free PMC article.

5

Dana-Farber repository for machine learning in immunology.

Zhang GL, Lin HH, Keskin DB, Reinherz EL, Brusic V. Zhang GL, et al. Among authors: keskin db. J Immunol Methods. 2011 Nov 30;374(1-2):18-25. doi: 10.1016/j.jim.2011.07.007. Epub 2011 Jul 18. J Immunol Methods. 2011. PMID: 21782820 Free PMC article.

6

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments.

DeLuca DS, Keskin DB, Zhang GL, Reinherz EL, Brusic V. DeLuca DS, et al. Among authors: keskin db. BMC Bioinformatics. 2011;12 Suppl 13(Suppl 13):S6. doi: 10.1186/1471-2105-12-S13-S6. Epub 2011 Nov 30. BMC Bioinformatics. 2011. PMID: 22373288 Free PMC article.

7

Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using Peptide block entropy.

Olsen LR, Zhang GL, Keskin DB, Reinherz EL, Brusic V. Olsen LR, et al. Among authors: keskin db. Front Immunol. 2011 Dec 20;2:69. doi: 10.3389/fimmu.2011.00069. eCollection 2011. Front Immunol. 2011. PMID: 22566858 Free PMC article.

8

Direct identification of an HPV-16 tumor antigen from cervical cancer biopsy specimens.

Keskin DB, Reinhold B, Lee SY, Zhang G, Lank S, O'Connor DH, Berkowitz RS, Brusic V, Kim SJ, Reinherz EL. Keskin DB, et al. Front Immunol. 2011 Dec 13;2:75. doi: 10.3389/fimmu.2011.00075. eCollection 2011. Front Immunol. 2011. PMID: 22566864 Free PMC article.

9

Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients.

Cai A, Keskin DB, DeLuca DS, Alonso A, Zhang W, Zhang GL, Hammond NN, Nardi V, Stone RM, Neuberg D, Sidney J, Brusic V, Wu CJ. Cai A, et al. Among authors: keskin db. Clin Cancer Res. 2012 Oct 15;18(20):5761-72. doi: 10.1158/1078-0432.CCR-12-1182. Epub 2012 Aug 21. Clin Cancer Res. 2012. PMID: 22912393 Free PMC article.

10

HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology.

Zhang GL, Riemer AB, Keskin DB, Chitkushev L, Reinherz EL, Brusic V. Zhang GL, et al. Among authors: keskin db. Database (Oxford). 2014 Apr 4;2014:bau031. doi: 10.1093/database/bau031. Print 2014. Database (Oxford). 2014. PMID: 24705205 Free PMC article.

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