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Cross-evaluation of E. coli's operon structures via a whole-cell model suggests alternative cellular benefits for low- versus high-expressing operons.
Cell Syst. 2024 Mar 20;15(3):227-245.e7. doi: 10.1016/j.cels.2024.02.002. Epub 2024 Feb 27.
Cell Syst. 2024.
PMID: 38417437
The EcoCyc Database (2023).
Karp PD, Paley S, Caspi R, Kothari A, Krummenacker M, Midford PE, Moore LR, Subhraveti P, Gama-Castro S, Tierrafria VH, Lara P, Muñiz-Rascado L, Bonavides-Martinez C, Santos-Zavaleta A, Mackie A, Sun G, Ahn-Horst TA, Choi H, Covert MW, Collado-Vides J, Paulsen I.
Karp PD, et al. Among authors: ahn horst ta.
EcoSal Plus. 2023 Dec 12;11(1):eesp00022023. doi: 10.1128/ecosalplus.esp-0002-2023. Epub 2023 May 11.
EcoSal Plus. 2023.
PMID: 37220074
Free article.
Review.
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An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control.
Ahn-Horst TA, Mille LS, Sun G, Morrison JH, Covert MW.
Ahn-Horst TA, et al.
NPJ Syst Biol Appl. 2022 Aug 19;8(1):30. doi: 10.1038/s41540-022-00242-9.
NPJ Syst Biol Appl. 2022.
PMID: 35986058
Free PMC article.
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The E. coli Whole-Cell Modeling Project.
Sun G, Ahn-Horst TA, Covert MW.
Sun G, et al. Among authors: ahn horst ta.
EcoSal Plus. 2021 Dec 15;9(2):eESP00012020. doi: 10.1128/ecosalplus.ESP-0001-2020. Epub 2021 Jul 9.
EcoSal Plus. 2021.
PMID: 34242084
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Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation.
Macklin DN, Ahn-Horst TA, Choi H, Ruggero NA, Carrera J, Mason JC, Sun G, Agmon E, DeFelice MM, Maayan I, Lane K, Spangler RK, Gillies TE, Paull ML, Akhter S, Bray SR, Weaver DS, Keseler IM, Karp PD, Morrison JH, Covert MW.
Macklin DN, et al. Among authors: ahn horst ta.
Science. 2020 Jul 24;369(6502):eaav3751. doi: 10.1126/science.aav3751.
Science. 2020.
PMID: 32703847
Free PMC article.
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