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Genome-scale metabolic modeling of the human gut bacterium Bacteroides fragilis strain 638R.
PLoS Comput Biol. 2023 Oct 30;19(10):e1011594. doi: 10.1371/journal.pcbi.1011594. eCollection 2023 Oct.
PLoS Comput Biol. 2023.
PMID: 37903176
Free PMC article.
The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions.
Tec-Campos D, Posadas C, Tibocha-Bonilla JD, Thiruppathy D, Glonek N, Zuñiga C, Zepeda A, Zengler K.
Tec-Campos D, et al. Among authors: thiruppathy d.
PLoS Comput Biol. 2023 Aug 9;19(8):e1011371. doi: 10.1371/journal.pcbi.1011371. eCollection 2023 Aug.
PLoS Comput Biol. 2023.
PMID: 37556472
Free PMC article.
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Guild and Niche Determination Enable Targeted Alteration of the Microbiome.
Moyne O, Al-Bassam M, Lieng C, Thiruppathy D, Norton GJ, Kumar M, Haddad E, Zaramela LS, Zengler K.
Moyne O, et al. Among authors: thiruppathy d.
bioRxiv [Preprint]. 2023 May 11:2023.05.11.540389. doi: 10.1101/2023.05.11.540389.
bioRxiv. 2023.
PMID: 37214910
Free PMC article.
Preprint.
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A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology.
Coker J, Zhalnina K, Marotz C, Thiruppathy D, Tjuanta M, D'Elia G, Hailu R, Mahosky T, Rowan M, Northen TR, Zengler K.
Coker J, et al. Among authors: thiruppathy d.
mSystems. 2022 Dec 20;7(6):e0095122. doi: 10.1128/msystems.00951-22. Epub 2022 Dec 6.
mSystems. 2022.
PMID: 36472419
Free PMC article.
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