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Common analysis of direct RNA sequencinG CUrrently leads to misidentification of m5C at GCU motifs.
Watson KJ, Bromley RE, Sparklin BC, Gasser MT, Bhattacharya T, Lebov JF, Tyson T, Dai N, Teigen LE, Graf KT, Foster JM, Michalski M, Bruno VM, Lindsey AR, Corrêa IR Jr, Hardy RW, Newton IL, Dunning Hotopp JC. Watson KJ, et al. Among authors: sparklin bc. Life Sci Alliance. 2023 Nov 29;7(2):e202302201. doi: 10.26508/lsa.202302201. Print 2024 Feb. Life Sci Alliance. 2023. PMID: 38030223 Free PMC article.
Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs.
Watson KJ, Bromley RE, Sparklin BC, Gasser MT, Bhattacharya T, Lebov JF, Tyson T, Teigen LE, Graf KT, Michalski M, Bruno VM, Lindsey ARI, Hardy RW, Newton ILG, Hotopp JCD. Watson KJ, et al. Among authors: sparklin bc. bioRxiv [Preprint]. 2023 May 3:2023.05.03.539298. doi: 10.1101/2023.05.03.539298. bioRxiv. 2023. PMID: 37205495 Free PMC article. Updated. Preprint.
X-treme loss of sequence diversity linked to neo-X chromosomes in filarial nematodes.
Mattick J, Libro S, Bromley R, Chaicumpa W, Chung M, Cook D, Khan MB, Kumar N, Lau YL, Misra-Bhattacharya S, Rao R, Sadzewicz L, Saeung A, Shahab M, Sparklin BC, Steven A, Turner JD, Tallon LJ, Taylor MJ, Moorhead AR, Michalski M, Foster JM, Dunning Hotopp JC. Mattick J, et al. Among authors: sparklin bc. PLoS Negl Trop Dis. 2021 Oct 27;15(10):e0009838. doi: 10.1371/journal.pntd.0009838. eCollection 2021 Oct. PLoS Negl Trop Dis. 2021. PMID: 34705823 Free PMC article.
Complete Genome Sequence of wBp, the Wolbachia Endosymbiont of Brugia pahangi FR3.
Lebov JF, Mattick J, Libro S, Sparklin BC, Chung M, Bromley RE, Nadendla S, Zhao X, Ott S, Sadzewicz L, Tallon LJ, Michalski ML, Foster JM, Dunning Hotopp JC. Lebov JF, et al. Among authors: sparklin bc. Microbiol Resour Announc. 2020 Jul 2;9(27):e00480-20. doi: 10.1128/MRA.00480-20. Microbiol Resour Announc. 2020. PMID: 32616636 Free PMC article.
Nearly Complete Genome Sequence of Brugia pahangi FR3.
Mattick J, Libro S, Sparklin BC, Chung M, Bromley RE, Nadendla S, Zhao X, Ott S, Sadzewicz L, Tallon LJ, Michalski ML, Foster JM, Dunning Hotopp JC. Mattick J, et al. Among authors: sparklin bc. Microbiol Resour Announc. 2020 Jul 2;9(27):e00479-20. doi: 10.1128/MRA.00479-20. Microbiol Resour Announc. 2020. PMID: 32616635 Free PMC article.
Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential.
Moser KA, Drábek EF, Dwivedi A, Stucke EM, Crabtree J, Dara A, Shah Z, Adams M, Li T, Rodrigues PT, Koren S, Phillippy AM, Munro JB, Ouattara A, Sparklin BC, Dunning Hotopp JC, Lyke KE, Sadzewicz L, Tallon LJ, Spring MD, Jongsakul K, Lon C, Saunders DL, Ferreira MU, Nyunt MM, Laufer MK, Travassos MA, Sauerwein RW, Takala-Harrison S, Fraser CM, Sim BKL, Hoffman SL, Plowe CV, Silva JC. Moser KA, et al. Among authors: sparklin bc. Genome Med. 2020 Jan 8;12(1):6. doi: 10.1186/s13073-019-0708-9. Genome Med. 2020. PMID: 31915075 Free PMC article.