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SEMA 2.0: web-platform for B-cell conformational epitopes prediction using artificial intelligence.
Nucleic Acids Res. 2024 May 14:gkae386. doi: 10.1093/nar/gkae386. Online ahead of print.
Nucleic Acids Res. 2024.
PMID: 38742639
PROSTATA: a framework for protein stability assessment using transformers.
Umerenkov D, Nikolaev F, Shashkova TI, Strashnov PV, Sindeeva M, Shevtsov A, Ivanisenko NV, Kardymon OL.
Umerenkov D, et al.
Bioinformatics. 2023 Nov 1;39(11):btad671. doi: 10.1093/bioinformatics/btad671.
Bioinformatics. 2023.
PMID: 37935419
Free PMC article.
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Z-flipon variants reveal the many roles of Z-DNA and Z-RNA in health and disease.
Umerenkov D, Herbert A, Konovalov D, Danilova A, Beknazarov N, Kokh V, Fedorov A, Poptsova M.
Umerenkov D, et al.
Life Sci Alliance. 2023 May 10;6(7):e202301962. doi: 10.26508/lsa.202301962. Print 2023 Jul.
Life Sci Alliance. 2023.
PMID: 37164635
Free PMC article.
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SEMA: Antigen B-cell conformational epitope prediction using deep transfer learning.
Shashkova TI, Umerenkov D, Salnikov M, Strashnov PV, Konstantinova AV, Lebed I, Shcherbinin DN, Asatryan MN, Kardymon OL, Ivanisenko NV.
Shashkova TI, et al. Among authors: umerenkov d.
Front Immunol. 2022 Sep 15;13:960985. doi: 10.3389/fimmu.2022.960985. eCollection 2022.
Front Immunol. 2022.
PMID: 36189325
Free PMC article.
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